Gene : Medtr3g033520 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12385:SF4 - PROTEIN PNS1 Description:  plasma-membrane choline transporter family protein
Genomic Order:  1272 Name:  ? Medtr3g033520
Secondary Identifier:  ? PAC:31057460
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g033520 0.5kb upstream 0.5kb upstream 5274 true chr3: 10738807-10744080 Medicago truncatula
Medtr3g033520 0.5kb upstream 0.5kb upstream 500 false chr3: 10738807-10739306 Medicago truncatula
Medtr3g033520 0.5kb downstream 0.5kb downstream 5274 true chr3: 10739307-10744580 Medicago truncatula
Medtr3g033520 0.5kb downstream 0.5kb downstream 500 false chr3: 10744081-10744580 Medicago truncatula
Medtr3g033520 1.0kb upstream 1.0kb upstream 5774 true chr3: 10738307-10744080 Medicago truncatula
Medtr3g033520 1.0kb upstream 1.0kb upstream 1000 false chr3: 10738307-10739306 Medicago truncatula
Medtr3g033520 1.0kb downstream 1.0kb downstream 5774 true chr3: 10739307-10745080 Medicago truncatula
Medtr3g033520 1.0kb downstream 1.0kb downstream 1000 false chr3: 10744081-10745080 Medicago truncatula
Medtr3g033520 2.0kb upstream 2.0kb upstream 6774 true chr3: 10737307-10744080 Medicago truncatula
Medtr3g033520 2.0kb upstream 2.0kb upstream 2000 false chr3: 10737307-10739306 Medicago truncatula
Medtr3g033520 2.0kb downstream 2.0kb downstream 6774 true chr3: 10739307-10746080 Medicago truncatula
Medtr3g033520 2.0kb downstream 2.0kb downstream 2000 false chr3: 10744081-10746080 Medicago truncatula
Medtr3g033520 5.0kb upstream 5.0kb upstream 9774 true chr3: 10734307-10744080 Medicago truncatula
Medtr3g033520 5.0kb upstream 5.0kb upstream 5000 false chr3: 10734307-10739306 Medicago truncatula
Medtr3g033520 5.0kb downstream 5.0kb downstream 9774 true chr3: 10739307-10749080 Medicago truncatula
Medtr3g033520 5.0kb downstream 5.0kb downstream 5000 false chr3: 10744081-10749080 Medicago truncatula
Medtr3g033520 10.0kb upstream 10.0kb upstream 14774 true chr3: 10729307-10744080 Medicago truncatula
Medtr3g033520 10.0kb upstream 10.0kb upstream 10000 false chr3: 10729307-10739306 Medicago truncatula
Medtr3g033520 10.0kb downstream 10.0kb downstream 14774 true chr3: 10739307-10754080 Medicago truncatula
Medtr3g033520 10.0kb downstream 10.0kb downstream 10000 false chr3: 10744081-10754080 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300471 5265 Fabidae View MSA
124064134 5270 Rosid View MSA
123745461 5271 Pentapetalae View MSA
122789891 5272 Eudicot View MSA
122050147 5273 Angiosperm View MSA
121349087 5274 Embryophyte View MSA
123381160 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.028       High
cufflinks 1.147        
cufflinks 1.035        
cufflinks 0.613        
cufflinks 1.671        
cufflinks 0.248       Low
cufflinks 0.684        
cufflinks 0.925        
cufflinks 0.673        

0 Strain