Gene : Medtr3g041700 M. truncatula Mt4.0v1
Defline:  (1 of 2) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Description:  hydroxymethylglutaryl-CoA lyase
Genomic Order:  1657 Name:  ? Medtr3g041700
Secondary Identifier:  ? PAC:31060805
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula LEU-DEG2-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g041700 0.5kb upstream 0.5kb upstream 5640 true chr3: 14847265-14852904 Medicago truncatula
Medtr3g041700 0.5kb upstream 0.5kb upstream 500 false chr3: 14847265-14847764 Medicago truncatula
Medtr3g041700 0.5kb downstream 0.5kb downstream 5640 true chr3: 14847765-14853404 Medicago truncatula
Medtr3g041700 0.5kb downstream 0.5kb downstream 500 false chr3: 14852905-14853404 Medicago truncatula
Medtr3g041700 1.0kb upstream 1.0kb upstream 6140 true chr3: 14846765-14852904 Medicago truncatula
Medtr3g041700 1.0kb upstream 1.0kb upstream 1000 false chr3: 14846765-14847764 Medicago truncatula
Medtr3g041700 1.0kb downstream 1.0kb downstream 6140 true chr3: 14847765-14853904 Medicago truncatula
Medtr3g041700 1.0kb downstream 1.0kb downstream 1000 false chr3: 14852905-14853904 Medicago truncatula
Medtr3g041700 2.0kb upstream 2.0kb upstream 7140 true chr3: 14845765-14852904 Medicago truncatula
Medtr3g041700 2.0kb upstream 2.0kb upstream 2000 false chr3: 14845765-14847764 Medicago truncatula
Medtr3g041700 2.0kb downstream 2.0kb downstream 7140 true chr3: 14847765-14854904 Medicago truncatula
Medtr3g041700 2.0kb downstream 2.0kb downstream 2000 false chr3: 14852905-14854904 Medicago truncatula
Medtr3g041700 5.0kb upstream 5.0kb upstream 10140 true chr3: 14842765-14852904 Medicago truncatula
Medtr3g041700 5.0kb upstream 5.0kb upstream 5000 false chr3: 14842765-14847764 Medicago truncatula
Medtr3g041700 5.0kb downstream 5.0kb downstream 10140 true chr3: 14847765-14857904 Medicago truncatula
Medtr3g041700 5.0kb downstream 5.0kb downstream 5000 false chr3: 14852905-14857904 Medicago truncatula
Medtr3g041700 10.0kb upstream 10.0kb upstream 15140 true chr3: 14837765-14852904 Medicago truncatula
Medtr3g041700 10.0kb upstream 10.0kb upstream 10000 false chr3: 14837765-14847764 Medicago truncatula
Medtr3g041700 10.0kb downstream 10.0kb downstream 15140 true chr3: 14847765-14862904 Medicago truncatula
Medtr3g041700 10.0kb downstream 10.0kb downstream 10000 false chr3: 14852905-14862904 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314208 5265 Fabidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.358        
cufflinks 4.38       High
cufflinks 1.255       Low
cufflinks 2.28        
cufflinks 1.496        
cufflinks 1.682        
cufflinks 2.059        
cufflinks 1.389        
cufflinks 2.17        

0 Strain