Gene : Medtr3g017580 M. truncatula Mt4.0v1
Defline:  (1 of 4) 2.4.2.10 - Orotate phosphoribosyltransferase / Orotidylic acid phosphorylase Description:  uridine 5-monophosphate synthase-like protein
Genomic Order:  634 Name:  ? Medtr3g017580
Secondary Identifier:  ? PAC:31055555
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY0-162 Medicago truncatula pathologic  
Mtruncatula PWY-5686 Medicago truncatula pathologic  
Mtruncatula PWY-7211 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g017580 0.5kb upstream 0.5kb upstream 5619 true chr3: 5030004-5035622 Medicago truncatula
Medtr3g017580 0.5kb upstream 0.5kb upstream 500 false chr3: 5030004-5030503 Medicago truncatula
Medtr3g017580 0.5kb downstream 0.5kb downstream 5619 true chr3: 5030504-5036122 Medicago truncatula
Medtr3g017580 0.5kb downstream 0.5kb downstream 500 false chr3: 5035623-5036122 Medicago truncatula
Medtr3g017580 1.0kb upstream 1.0kb upstream 6119 true chr3: 5029504-5035622 Medicago truncatula
Medtr3g017580 1.0kb upstream 1.0kb upstream 1000 false chr3: 5029504-5030503 Medicago truncatula
Medtr3g017580 1.0kb downstream 1.0kb downstream 6119 true chr3: 5030504-5036622 Medicago truncatula
Medtr3g017580 1.0kb downstream 1.0kb downstream 1000 false chr3: 5035623-5036622 Medicago truncatula
Medtr3g017580 2.0kb upstream 2.0kb upstream 7119 true chr3: 5028504-5035622 Medicago truncatula
Medtr3g017580 2.0kb upstream 2.0kb upstream 2000 false chr3: 5028504-5030503 Medicago truncatula
Medtr3g017580 2.0kb downstream 2.0kb downstream 7119 true chr3: 5030504-5037622 Medicago truncatula
Medtr3g017580 2.0kb downstream 2.0kb downstream 2000 false chr3: 5035623-5037622 Medicago truncatula
Medtr3g017580 5.0kb upstream 5.0kb upstream 10119 true chr3: 5025504-5035622 Medicago truncatula
Medtr3g017580 5.0kb upstream 5.0kb upstream 5000 false chr3: 5025504-5030503 Medicago truncatula
Medtr3g017580 5.0kb downstream 5.0kb downstream 10119 true chr3: 5030504-5040622 Medicago truncatula
Medtr3g017580 5.0kb downstream 5.0kb downstream 5000 false chr3: 5035623-5040622 Medicago truncatula
Medtr3g017580 10.0kb upstream 10.0kb upstream 15119 true chr3: 5020504-5035622 Medicago truncatula
Medtr3g017580 10.0kb upstream 10.0kb upstream 10000 false chr3: 5020504-5030503 Medicago truncatula
Medtr3g017580 10.0kb downstream 10.0kb downstream 15119 true chr3: 5030504-5045622 Medicago truncatula
Medtr3g017580 10.0kb downstream 10.0kb downstream 10000 false chr3: 5035623-5045622 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300659 5265 Fabidae View MSA
124060638 5270 Rosid View MSA
123751852 5271 Pentapetalae View MSA
122789079 5272 Eudicot View MSA
122042153 5273 Angiosperm View MSA
121351237 5274 Embryophyte View MSA
123424950 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.67        
cufflinks 1.208        
cufflinks 1.429        
cufflinks 2.384        
cufflinks 2.283        
cufflinks 0.582       Low
cufflinks 2.013        
cufflinks 1.487        
cufflinks 4.052       High

0 Strain