Gene : Medtr3g017590 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR10315//PTHR10315:SF29 - SEVEN IN ABSENTIA HOMOLOG Description:  ubiquitin ligase SINAT3
Genomic Order:  635 Name:  ? Medtr3g017590
Secondary Identifier:  ? PAC:31060358
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g017590 0.5kb upstream 0.5kb upstream 4588 true chr3: 5036144-5040731 Medicago truncatula
Medtr3g017590 0.5kb upstream 0.5kb upstream 500 false chr3: 5040232-5040731 Medicago truncatula
Medtr3g017590 0.5kb downstream 0.5kb downstream 4588 true chr3: 5035644-5040231 Medicago truncatula
Medtr3g017590 0.5kb downstream 0.5kb downstream 500 false chr3: 5035644-5036143 Medicago truncatula
Medtr3g017590 1.0kb upstream 1.0kb upstream 5088 true chr3: 5036144-5041231 Medicago truncatula
Medtr3g017590 1.0kb upstream 1.0kb upstream 1000 false chr3: 5040232-5041231 Medicago truncatula
Medtr3g017590 1.0kb downstream 1.0kb downstream 5088 true chr3: 5035144-5040231 Medicago truncatula
Medtr3g017590 1.0kb downstream 1.0kb downstream 1000 false chr3: 5035144-5036143 Medicago truncatula
Medtr3g017590 2.0kb upstream 2.0kb upstream 6088 true chr3: 5036144-5042231 Medicago truncatula
Medtr3g017590 2.0kb upstream 2.0kb upstream 2000 false chr3: 5040232-5042231 Medicago truncatula
Medtr3g017590 2.0kb downstream 2.0kb downstream 6088 true chr3: 5034144-5040231 Medicago truncatula
Medtr3g017590 2.0kb downstream 2.0kb downstream 2000 false chr3: 5034144-5036143 Medicago truncatula
Medtr3g017590 5.0kb upstream 5.0kb upstream 9088 true chr3: 5036144-5045231 Medicago truncatula
Medtr3g017590 5.0kb upstream 5.0kb upstream 5000 false chr3: 5040232-5045231 Medicago truncatula
Medtr3g017590 5.0kb downstream 5.0kb downstream 9088 true chr3: 5031144-5040231 Medicago truncatula
Medtr3g017590 5.0kb downstream 5.0kb downstream 5000 false chr3: 5031144-5036143 Medicago truncatula
Medtr3g017590 10.0kb upstream 10.0kb upstream 14088 true chr3: 5036144-5050231 Medicago truncatula
Medtr3g017590 10.0kb upstream 10.0kb upstream 10000 false chr3: 5040232-5050231 Medicago truncatula
Medtr3g017590 10.0kb downstream 10.0kb downstream 14088 true chr3: 5026144-5040231 Medicago truncatula
Medtr3g017590 10.0kb downstream 10.0kb downstream 10000 false chr3: 5026144-5036143 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306983 5265 Fabidae View MSA
124069632 5270 Rosid View MSA
123750736 5271 Pentapetalae View MSA
122797657 5272 Eudicot View MSA
122049350 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.55        
cufflinks 1.03       Low
cufflinks 2.037        
cufflinks 2.263        
cufflinks 1.374        
cufflinks 2.256        
cufflinks 4.305       High
cufflinks 1.084       Low
cufflinks 4.914       High

0 Strain