Gene : Medtr3g026950 M. truncatula Mt4.0v1
Defline:  (1 of 14) PTHR31642:SF57 - SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE Description:  spermidine hydroxycinnamoyl transferase
Genomic Order:  992 Name:  ? Medtr3g026950
Secondary Identifier:  ? PAC:31060883
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-361 Medicago truncatula pathologic  
Mtruncatula PWY-6040 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g026950 0.5kb upstream 0.5kb upstream 1998 true chr3: 8322834-8324831 Medicago truncatula
Medtr3g026950 0.5kb upstream 0.5kb upstream 500 false chr3: 8324332-8324831 Medicago truncatula
Medtr3g026950 0.5kb downstream 0.5kb downstream 1998 true chr3: 8322334-8324331 Medicago truncatula
Medtr3g026950 0.5kb downstream 0.5kb downstream 500 false chr3: 8322334-8322833 Medicago truncatula
Medtr3g026950 1.0kb upstream 1.0kb upstream 2498 true chr3: 8322834-8325331 Medicago truncatula
Medtr3g026950 1.0kb upstream 1.0kb upstream 1000 false chr3: 8324332-8325331 Medicago truncatula
Medtr3g026950 1.0kb downstream 1.0kb downstream 2498 true chr3: 8321834-8324331 Medicago truncatula
Medtr3g026950 1.0kb downstream 1.0kb downstream 1000 false chr3: 8321834-8322833 Medicago truncatula
Medtr3g026950 2.0kb upstream 2.0kb upstream 3498 true chr3: 8322834-8326331 Medicago truncatula
Medtr3g026950 2.0kb upstream 2.0kb upstream 2000 false chr3: 8324332-8326331 Medicago truncatula
Medtr3g026950 2.0kb downstream 2.0kb downstream 3498 true chr3: 8320834-8324331 Medicago truncatula
Medtr3g026950 2.0kb downstream 2.0kb downstream 2000 false chr3: 8320834-8322833 Medicago truncatula
Medtr3g026950 5.0kb upstream 5.0kb upstream 6498 true chr3: 8322834-8329331 Medicago truncatula
Medtr3g026950 5.0kb upstream 5.0kb upstream 5000 false chr3: 8324332-8329331 Medicago truncatula
Medtr3g026950 5.0kb downstream 5.0kb downstream 6498 true chr3: 8317834-8324331 Medicago truncatula
Medtr3g026950 5.0kb downstream 5.0kb downstream 5000 false chr3: 8317834-8322833 Medicago truncatula
Medtr3g026950 10.0kb upstream 10.0kb upstream 11498 true chr3: 8322834-8334331 Medicago truncatula
Medtr3g026950 10.0kb upstream 10.0kb upstream 10000 false chr3: 8324332-8334331 Medicago truncatula
Medtr3g026950 10.0kb downstream 10.0kb downstream 11498 true chr3: 8312834-8324331 Medicago truncatula
Medtr3g026950 10.0kb downstream 10.0kb downstream 10000 false chr3: 8312834-8322833 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792312 5273 Angiosperm View MSA
122298352 5265 Fabidae View MSA
124036429 5270 Rosid View MSA
123609777 5271 Pentapetalae View MSA
122797299 5272 Eudicot View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.397        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.736        
cufflinks 0.747        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.426        

0 Strain