Gene : Medtr3g079900 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24031:SF50 - DEAD/DEAH BOX RNA HELICASE FAMILY PROTEIN Description:  DEAD-box ATP-dependent RNA helicase
Genomic Order:  4072 Name:  ? Medtr3g079900
Secondary Identifier:  ? PAC:31058444
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g079900 0.5kb upstream 0.5kb upstream 5391 true chr3: 36106004-36111394 Medicago truncatula
Medtr3g079900 0.5kb upstream 0.5kb upstream 500 false chr3: 36110895-36111394 Medicago truncatula
Medtr3g079900 0.5kb downstream 0.5kb downstream 5391 true chr3: 36105504-36110894 Medicago truncatula
Medtr3g079900 0.5kb downstream 0.5kb downstream 500 false chr3: 36105504-36106003 Medicago truncatula
Medtr3g079900 1.0kb upstream 1.0kb upstream 5891 true chr3: 36106004-36111894 Medicago truncatula
Medtr3g079900 1.0kb upstream 1.0kb upstream 1000 false chr3: 36110895-36111894 Medicago truncatula
Medtr3g079900 1.0kb downstream 1.0kb downstream 5891 true chr3: 36105004-36110894 Medicago truncatula
Medtr3g079900 1.0kb downstream 1.0kb downstream 1000 false chr3: 36105004-36106003 Medicago truncatula
Medtr3g079900 2.0kb upstream 2.0kb upstream 6891 true chr3: 36106004-36112894 Medicago truncatula
Medtr3g079900 2.0kb upstream 2.0kb upstream 2000 false chr3: 36110895-36112894 Medicago truncatula
Medtr3g079900 2.0kb downstream 2.0kb downstream 6891 true chr3: 36104004-36110894 Medicago truncatula
Medtr3g079900 2.0kb downstream 2.0kb downstream 2000 false chr3: 36104004-36106003 Medicago truncatula
Medtr3g079900 5.0kb upstream 5.0kb upstream 9891 true chr3: 36106004-36115894 Medicago truncatula
Medtr3g079900 5.0kb upstream 5.0kb upstream 5000 false chr3: 36110895-36115894 Medicago truncatula
Medtr3g079900 5.0kb downstream 5.0kb downstream 9891 true chr3: 36101004-36110894 Medicago truncatula
Medtr3g079900 5.0kb downstream 5.0kb downstream 5000 false chr3: 36101004-36106003 Medicago truncatula
Medtr3g079900 10.0kb upstream 10.0kb upstream 14891 true chr3: 36106004-36120894 Medicago truncatula
Medtr3g079900 10.0kb upstream 10.0kb upstream 10000 false chr3: 36110895-36120894 Medicago truncatula
Medtr3g079900 10.0kb downstream 10.0kb downstream 14891 true chr3: 36096004-36110894 Medicago truncatula
Medtr3g079900 10.0kb downstream 10.0kb downstream 10000 false chr3: 36096004-36106003 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041472 5273 Angiosperm View MSA
122313333 5265 Fabidae View MSA
124038563 5270 Rosid View MSA
123749216 5271 Pentapetalae View MSA
122790449 5272 Eudicot View MSA
121349019 5274 Embryophyte View MSA
123425837 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.036     Low  
cufflinks 0.11        
cufflinks 0.213       High
cufflinks 0.023     Low Low
cufflinks 0.13        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low  
cufflinks 0.132        
cufflinks 0.054     Low  

0 Strain