Gene : Medtr3g080160 M. truncatula Mt4.0v1
Defline:  (1 of 243) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Description:  RNA recognition motif, a.k.a. RRM, RBD protein
Genomic Order:  4093 Name:  ? Medtr3g080160
Secondary Identifier:  ? PAC:31060542
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g080160 0.5kb upstream 0.5kb upstream 854 true chr3: 36260749-36261602 Medicago truncatula
Medtr3g080160 0.5kb upstream 0.5kb upstream 500 false chr3: 36260749-36261248 Medicago truncatula
Medtr3g080160 0.5kb downstream 0.5kb downstream 854 true chr3: 36261249-36262102 Medicago truncatula
Medtr3g080160 0.5kb downstream 0.5kb downstream 500 false chr3: 36261603-36262102 Medicago truncatula
Medtr3g080160 1.0kb upstream 1.0kb upstream 1354 true chr3: 36260249-36261602 Medicago truncatula
Medtr3g080160 1.0kb upstream 1.0kb upstream 1000 false chr3: 36260249-36261248 Medicago truncatula
Medtr3g080160 1.0kb downstream 1.0kb downstream 1354 true chr3: 36261249-36262602 Medicago truncatula
Medtr3g080160 1.0kb downstream 1.0kb downstream 1000 false chr3: 36261603-36262602 Medicago truncatula
Medtr3g080160 2.0kb upstream 2.0kb upstream 2354 true chr3: 36259249-36261602 Medicago truncatula
Medtr3g080160 2.0kb upstream 2.0kb upstream 2000 false chr3: 36259249-36261248 Medicago truncatula
Medtr3g080160 2.0kb downstream 2.0kb downstream 2354 true chr3: 36261249-36263602 Medicago truncatula
Medtr3g080160 2.0kb downstream 2.0kb downstream 2000 false chr3: 36261603-36263602 Medicago truncatula
Medtr3g080160 5.0kb upstream 5.0kb upstream 5354 true chr3: 36256249-36261602 Medicago truncatula
Medtr3g080160 5.0kb upstream 5.0kb upstream 5000 false chr3: 36256249-36261248 Medicago truncatula
Medtr3g080160 5.0kb downstream 5.0kb downstream 5354 true chr3: 36261249-36266602 Medicago truncatula
Medtr3g080160 5.0kb downstream 5.0kb downstream 5000 false chr3: 36261603-36266602 Medicago truncatula
Medtr3g080160 10.0kb upstream 10.0kb upstream 10354 true chr3: 36251249-36261602 Medicago truncatula
Medtr3g080160 10.0kb upstream 10.0kb upstream 10000 false chr3: 36251249-36261248 Medicago truncatula
Medtr3g080160 10.0kb downstream 10.0kb downstream 10354 true chr3: 36261249-36271602 Medicago truncatula
Medtr3g080160 10.0kb downstream 10.0kb downstream 10000 false chr3: 36261603-36271602 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314678 5265 Fabidae View MSA
124036917 5270 Rosid View MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.316        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.214        
cufflinks 0.064     Low  
cufflinks 0.057     Low Low
cufflinks 0.172        
cufflinks 0.64       High
cufflinks 0.098        
cufflinks 0.085     Low  

0 Strain