Gene : Medtr3g072660 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13152 - TFIIH, POLYPEPTIDE 4 Description:  transcription factor
Genomic Order:  3624 Name:  ? Medtr3g072660
Secondary Identifier:  ? PAC:31053923
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g072660 0.5kb upstream 0.5kb upstream 7471 true chr3: 32701366-32708836 Medicago truncatula
Medtr3g072660 0.5kb upstream 0.5kb upstream 500 false chr3: 32701366-32701865 Medicago truncatula
Medtr3g072660 0.5kb downstream 0.5kb downstream 7471 true chr3: 32701866-32709336 Medicago truncatula
Medtr3g072660 0.5kb downstream 0.5kb downstream 500 false chr3: 32708837-32709336 Medicago truncatula
Medtr3g072660 1.0kb upstream 1.0kb upstream 7971 true chr3: 32700866-32708836 Medicago truncatula
Medtr3g072660 1.0kb upstream 1.0kb upstream 1000 false chr3: 32700866-32701865 Medicago truncatula
Medtr3g072660 1.0kb downstream 1.0kb downstream 7971 true chr3: 32701866-32709836 Medicago truncatula
Medtr3g072660 1.0kb downstream 1.0kb downstream 1000 false chr3: 32708837-32709836 Medicago truncatula
Medtr3g072660 2.0kb upstream 2.0kb upstream 8971 true chr3: 32699866-32708836 Medicago truncatula
Medtr3g072660 2.0kb upstream 2.0kb upstream 2000 false chr3: 32699866-32701865 Medicago truncatula
Medtr3g072660 2.0kb downstream 2.0kb downstream 8971 true chr3: 32701866-32710836 Medicago truncatula
Medtr3g072660 2.0kb downstream 2.0kb downstream 2000 false chr3: 32708837-32710836 Medicago truncatula
Medtr3g072660 5.0kb upstream 5.0kb upstream 11971 true chr3: 32696866-32708836 Medicago truncatula
Medtr3g072660 5.0kb upstream 5.0kb upstream 5000 false chr3: 32696866-32701865 Medicago truncatula
Medtr3g072660 5.0kb downstream 5.0kb downstream 11971 true chr3: 32701866-32713836 Medicago truncatula
Medtr3g072660 5.0kb downstream 5.0kb downstream 5000 false chr3: 32708837-32713836 Medicago truncatula
Medtr3g072660 10.0kb upstream 10.0kb upstream 16971 true chr3: 32691866-32708836 Medicago truncatula
Medtr3g072660 10.0kb upstream 10.0kb upstream 10000 false chr3: 32691866-32701865 Medicago truncatula
Medtr3g072660 10.0kb downstream 10.0kb downstream 16971 true chr3: 32701866-32718836 Medicago truncatula
Medtr3g072660 10.0kb downstream 10.0kb downstream 10000 false chr3: 32708837-32718836 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303839 5265 Fabidae View MSA
124050287 5270 Rosid View MSA
123747685 5271 Pentapetalae View MSA
122797891 5272 Eudicot View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.14        
cufflinks 0.176        
cufflinks 0.273       High
cufflinks 0.039     Low Low
cufflinks 0.243        
cufflinks 0.115     Low  
cufflinks 0.087        
cufflinks 0.209        
cufflinks 0.045     Low Low

0 Strain