Gene : Medtr3g077160 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Description:  histone deacetylase family protein
Genomic Order:  3885 Name:  ? Medtr3g077160
Secondary Identifier:  ? PAC:31060576
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g077160 0.5kb upstream 0.5kb upstream 6734 true chr3: 34636318-34643051 Medicago truncatula
Medtr3g077160 0.5kb upstream 0.5kb upstream 500 false chr3: 34636318-34636817 Medicago truncatula
Medtr3g077160 0.5kb downstream 0.5kb downstream 6734 true chr3: 34636818-34643551 Medicago truncatula
Medtr3g077160 0.5kb downstream 0.5kb downstream 500 false chr3: 34643052-34643551 Medicago truncatula
Medtr3g077160 1.0kb upstream 1.0kb upstream 7234 true chr3: 34635818-34643051 Medicago truncatula
Medtr3g077160 1.0kb upstream 1.0kb upstream 1000 false chr3: 34635818-34636817 Medicago truncatula
Medtr3g077160 1.0kb downstream 1.0kb downstream 7234 true chr3: 34636818-34644051 Medicago truncatula
Medtr3g077160 1.0kb downstream 1.0kb downstream 1000 false chr3: 34643052-34644051 Medicago truncatula
Medtr3g077160 2.0kb upstream 2.0kb upstream 8234 true chr3: 34634818-34643051 Medicago truncatula
Medtr3g077160 2.0kb upstream 2.0kb upstream 2000 false chr3: 34634818-34636817 Medicago truncatula
Medtr3g077160 2.0kb downstream 2.0kb downstream 8234 true chr3: 34636818-34645051 Medicago truncatula
Medtr3g077160 2.0kb downstream 2.0kb downstream 2000 false chr3: 34643052-34645051 Medicago truncatula
Medtr3g077160 5.0kb upstream 5.0kb upstream 11234 true chr3: 34631818-34643051 Medicago truncatula
Medtr3g077160 5.0kb upstream 5.0kb upstream 5000 false chr3: 34631818-34636817 Medicago truncatula
Medtr3g077160 5.0kb downstream 5.0kb downstream 11234 true chr3: 34636818-34648051 Medicago truncatula
Medtr3g077160 5.0kb downstream 5.0kb downstream 5000 false chr3: 34643052-34648051 Medicago truncatula
Medtr3g077160 10.0kb upstream 10.0kb upstream 16234 true chr3: 34626818-34643051 Medicago truncatula
Medtr3g077160 10.0kb upstream 10.0kb upstream 10000 false chr3: 34626818-34636817 Medicago truncatula
Medtr3g077160 10.0kb downstream 10.0kb downstream 16234 true chr3: 34636818-34653051 Medicago truncatula
Medtr3g077160 10.0kb downstream 10.0kb downstream 10000 false chr3: 34643052-34653051 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.27        
cufflinks 4.09       Low
cufflinks 5.904        
cufflinks 10.121     High High
cufflinks 5.484        
cufflinks 5.554        
cufflinks 5.748        
cufflinks 4.169        
cufflinks 9.081       High

0 Strain