Gene : Medtr3g058410 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Description:  serine acetyltransferase
Genomic Order:  2402 Name:  ? Medtr3g058410
Secondary Identifier:  ? PAC:31055282
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CYSTSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6936 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g058410 0.5kb upstream 0.5kb upstream 2184 true chr3: 23157582-23159765 Medicago truncatula
Medtr3g058410 0.5kb upstream 0.5kb upstream 500 false chr3: 23159266-23159765 Medicago truncatula
Medtr3g058410 0.5kb downstream 0.5kb downstream 2184 true chr3: 23157082-23159265 Medicago truncatula
Medtr3g058410 0.5kb downstream 0.5kb downstream 500 false chr3: 23157082-23157581 Medicago truncatula
Medtr3g058410 1.0kb upstream 1.0kb upstream 2684 true chr3: 23157582-23160265 Medicago truncatula
Medtr3g058410 1.0kb upstream 1.0kb upstream 1000 false chr3: 23159266-23160265 Medicago truncatula
Medtr3g058410 1.0kb downstream 1.0kb downstream 2684 true chr3: 23156582-23159265 Medicago truncatula
Medtr3g058410 1.0kb downstream 1.0kb downstream 1000 false chr3: 23156582-23157581 Medicago truncatula
Medtr3g058410 2.0kb upstream 2.0kb upstream 3684 true chr3: 23157582-23161265 Medicago truncatula
Medtr3g058410 2.0kb upstream 2.0kb upstream 2000 false chr3: 23159266-23161265 Medicago truncatula
Medtr3g058410 2.0kb downstream 2.0kb downstream 3684 true chr3: 23155582-23159265 Medicago truncatula
Medtr3g058410 2.0kb downstream 2.0kb downstream 2000 false chr3: 23155582-23157581 Medicago truncatula
Medtr3g058410 5.0kb upstream 5.0kb upstream 6684 true chr3: 23157582-23164265 Medicago truncatula
Medtr3g058410 5.0kb upstream 5.0kb upstream 5000 false chr3: 23159266-23164265 Medicago truncatula
Medtr3g058410 5.0kb downstream 5.0kb downstream 6684 true chr3: 23152582-23159265 Medicago truncatula
Medtr3g058410 5.0kb downstream 5.0kb downstream 5000 false chr3: 23152582-23157581 Medicago truncatula
Medtr3g058410 10.0kb upstream 10.0kb upstream 11684 true chr3: 23157582-23169265 Medicago truncatula
Medtr3g058410 10.0kb upstream 10.0kb upstream 10000 false chr3: 23159266-23169265 Medicago truncatula
Medtr3g058410 10.0kb downstream 10.0kb downstream 11684 true chr3: 23147582-23159265 Medicago truncatula
Medtr3g058410 10.0kb downstream 10.0kb downstream 10000 false chr3: 23147582-23157581 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300401 5265 Fabidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 106.539     High  
cufflinks 38.229     High  
cufflinks 36.472     High  
cufflinks 182.037     High High
cufflinks 37.959     High  
cufflinks 185.582     High High
cufflinks 171.772     High  
cufflinks 25.835     High Low
cufflinks 120.494     High  

0 Strain