Gene : Medtr3g058990 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG4849 - mRNA cleavage factor I subunit/CPSF subunit Description:  RNA recognition motif, a.k.a. RRM, RBD protein
Genomic Order:  2448 Name:  ? Medtr3g058990
Secondary Identifier:  ? PAC:31056280
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g058990 0.5kb upstream 0.5kb upstream 4791 true chr3: 23576089-23580879 Medicago truncatula
Medtr3g058990 0.5kb upstream 0.5kb upstream 500 false chr3: 23580380-23580879 Medicago truncatula
Medtr3g058990 0.5kb downstream 0.5kb downstream 4791 true chr3: 23575589-23580379 Medicago truncatula
Medtr3g058990 0.5kb downstream 0.5kb downstream 500 false chr3: 23575589-23576088 Medicago truncatula
Medtr3g058990 1.0kb upstream 1.0kb upstream 5291 true chr3: 23576089-23581379 Medicago truncatula
Medtr3g058990 1.0kb upstream 1.0kb upstream 1000 false chr3: 23580380-23581379 Medicago truncatula
Medtr3g058990 1.0kb downstream 1.0kb downstream 5291 true chr3: 23575089-23580379 Medicago truncatula
Medtr3g058990 1.0kb downstream 1.0kb downstream 1000 false chr3: 23575089-23576088 Medicago truncatula
Medtr3g058990 2.0kb upstream 2.0kb upstream 6291 true chr3: 23576089-23582379 Medicago truncatula
Medtr3g058990 2.0kb upstream 2.0kb upstream 2000 false chr3: 23580380-23582379 Medicago truncatula
Medtr3g058990 2.0kb downstream 2.0kb downstream 6291 true chr3: 23574089-23580379 Medicago truncatula
Medtr3g058990 2.0kb downstream 2.0kb downstream 2000 false chr3: 23574089-23576088 Medicago truncatula
Medtr3g058990 5.0kb upstream 5.0kb upstream 9291 true chr3: 23576089-23585379 Medicago truncatula
Medtr3g058990 5.0kb upstream 5.0kb upstream 5000 false chr3: 23580380-23585379 Medicago truncatula
Medtr3g058990 5.0kb downstream 5.0kb downstream 9291 true chr3: 23571089-23580379 Medicago truncatula
Medtr3g058990 5.0kb downstream 5.0kb downstream 5000 false chr3: 23571089-23576088 Medicago truncatula
Medtr3g058990 10.0kb upstream 10.0kb upstream 14291 true chr3: 23576089-23590379 Medicago truncatula
Medtr3g058990 10.0kb upstream 10.0kb upstream 10000 false chr3: 23580380-23590379 Medicago truncatula
Medtr3g058990 10.0kb downstream 10.0kb downstream 14291 true chr3: 23566089-23580379 Medicago truncatula
Medtr3g058990 10.0kb downstream 10.0kb downstream 10000 false chr3: 23566089-23576088 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122295302 5265 Fabidae View MSA
124034961 5270 Rosid View MSA
123752674 5271 Pentapetalae View MSA
122796288 5272 Eudicot View MSA
122042872 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349327 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.159       High
cufflinks 0.847       Low
cufflinks 1.125        
cufflinks 2.815        
cufflinks 1.251        
cufflinks 1.892        
cufflinks 2.92        
cufflinks 0.852       Low
cufflinks 3.178       High

0 Strain