Gene : Medtr3g101640 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11709:SF94 - LACCASE-15 Description:  transparent testa protein
Genomic Order:  5566 Name:  ? Medtr3g101640
Secondary Identifier:  ? PAC:31059838
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5466 Medicago truncatula pathologic  
Mtruncatula PWY-6824 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g101640 0.5kb upstream 0.5kb upstream 4669 true chr3: 46789301-46793969 Medicago truncatula
Medtr3g101640 0.5kb upstream 0.5kb upstream 500 false chr3: 46793470-46793969 Medicago truncatula
Medtr3g101640 0.5kb downstream 0.5kb downstream 4669 true chr3: 46788801-46793469 Medicago truncatula
Medtr3g101640 0.5kb downstream 0.5kb downstream 500 false chr3: 46788801-46789300 Medicago truncatula
Medtr3g101640 1.0kb upstream 1.0kb upstream 5169 true chr3: 46789301-46794469 Medicago truncatula
Medtr3g101640 1.0kb upstream 1.0kb upstream 1000 false chr3: 46793470-46794469 Medicago truncatula
Medtr3g101640 1.0kb downstream 1.0kb downstream 5169 true chr3: 46788301-46793469 Medicago truncatula
Medtr3g101640 1.0kb downstream 1.0kb downstream 1000 false chr3: 46788301-46789300 Medicago truncatula
Medtr3g101640 2.0kb upstream 2.0kb upstream 6169 true chr3: 46789301-46795469 Medicago truncatula
Medtr3g101640 2.0kb upstream 2.0kb upstream 2000 false chr3: 46793470-46795469 Medicago truncatula
Medtr3g101640 2.0kb downstream 2.0kb downstream 6169 true chr3: 46787301-46793469 Medicago truncatula
Medtr3g101640 2.0kb downstream 2.0kb downstream 2000 false chr3: 46787301-46789300 Medicago truncatula
Medtr3g101640 5.0kb upstream 5.0kb upstream 9169 true chr3: 46789301-46798469 Medicago truncatula
Medtr3g101640 5.0kb upstream 5.0kb upstream 5000 false chr3: 46793470-46798469 Medicago truncatula
Medtr3g101640 5.0kb downstream 5.0kb downstream 9169 true chr3: 46784301-46793469 Medicago truncatula
Medtr3g101640 5.0kb downstream 5.0kb downstream 5000 false chr3: 46784301-46789300 Medicago truncatula
Medtr3g101640 10.0kb upstream 10.0kb upstream 14169 true chr3: 46789301-46803469 Medicago truncatula
Medtr3g101640 10.0kb upstream 10.0kb upstream 10000 false chr3: 46793470-46803469 Medicago truncatula
Medtr3g101640 10.0kb downstream 10.0kb downstream 14169 true chr3: 46779301-46793469 Medicago truncatula
Medtr3g101640 10.0kb downstream 10.0kb downstream 10000 false chr3: 46779301-46789300 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314424 5265 Fabidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain