Gene : Medtr3g096500 M. truncatula Mt4.0v1
Defline:  (1 of 6) 4.2.3.19 - Ent-kaurene synthase / Ent-kaurene synthetase B Description:  gibberellin 20-oxidase
Genomic Order:  5208 Name:  ? Medtr3g096500
Secondary Identifier:  ? PAC:31053636
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5032 Medicago truncatula pathologic  
Mtruncatula PWY-5053 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g096500 0.5kb upstream 0.5kb upstream 3328 true chr3: 44112343-44115670 Medicago truncatula
Medtr3g096500 0.5kb upstream 0.5kb upstream 500 false chr3: 44115171-44115670 Medicago truncatula
Medtr3g096500 0.5kb downstream 0.5kb downstream 3328 true chr3: 44111843-44115170 Medicago truncatula
Medtr3g096500 0.5kb downstream 0.5kb downstream 500 false chr3: 44111843-44112342 Medicago truncatula
Medtr3g096500 1.0kb upstream 1.0kb upstream 3828 true chr3: 44112343-44116170 Medicago truncatula
Medtr3g096500 1.0kb upstream 1.0kb upstream 1000 false chr3: 44115171-44116170 Medicago truncatula
Medtr3g096500 1.0kb downstream 1.0kb downstream 3828 true chr3: 44111343-44115170 Medicago truncatula
Medtr3g096500 1.0kb downstream 1.0kb downstream 1000 false chr3: 44111343-44112342 Medicago truncatula
Medtr3g096500 2.0kb upstream 2.0kb upstream 4828 true chr3: 44112343-44117170 Medicago truncatula
Medtr3g096500 2.0kb upstream 2.0kb upstream 2000 false chr3: 44115171-44117170 Medicago truncatula
Medtr3g096500 2.0kb downstream 2.0kb downstream 4828 true chr3: 44110343-44115170 Medicago truncatula
Medtr3g096500 2.0kb downstream 2.0kb downstream 2000 false chr3: 44110343-44112342 Medicago truncatula
Medtr3g096500 5.0kb upstream 5.0kb upstream 7828 true chr3: 44112343-44120170 Medicago truncatula
Medtr3g096500 5.0kb upstream 5.0kb upstream 5000 false chr3: 44115171-44120170 Medicago truncatula
Medtr3g096500 5.0kb downstream 5.0kb downstream 7828 true chr3: 44107343-44115170 Medicago truncatula
Medtr3g096500 5.0kb downstream 5.0kb downstream 5000 false chr3: 44107343-44112342 Medicago truncatula
Medtr3g096500 10.0kb upstream 10.0kb upstream 12828 true chr3: 44112343-44125170 Medicago truncatula
Medtr3g096500 10.0kb upstream 10.0kb upstream 10000 false chr3: 44115171-44125170 Medicago truncatula
Medtr3g096500 10.0kb downstream 10.0kb downstream 12828 true chr3: 44102343-44115170 Medicago truncatula
Medtr3g096500 10.0kb downstream 10.0kb downstream 10000 false chr3: 44102343-44112342 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296280 5265 Fabidae View MSA
124071388 5270 Rosid View MSA
123748774 5271 Pentapetalae View MSA
122795776 5272 Eudicot View MSA
122047405 5273 Angiosperm View MSA
121349233 5274 Embryophyte View MSA
123381227 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.139     High High
cufflinks 3.496        
cufflinks 7.976       High
cufflinks 0.096       Low
cufflinks 2.5        
cufflinks 1.025        
cufflinks 0.636        
cufflinks 4.228        
cufflinks 0.347        

0 Strain