Gene : Medtr3g092840 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR19919:SF2 - PROTEIN TRANSPARENT TESTA GLABRA 1 Description:  transparent testa glabra protein
Genomic Order:  4966 Name:  ? Medtr3g092840
Secondary Identifier:  ? PAC:31056093
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g092840 0.5kb upstream 0.5kb upstream 2816 true chr3: 42441118-42443933 Medicago truncatula
Medtr3g092840 0.5kb upstream 0.5kb upstream 500 false chr3: 42443434-42443933 Medicago truncatula
Medtr3g092840 0.5kb downstream 0.5kb downstream 2816 true chr3: 42440618-42443433 Medicago truncatula
Medtr3g092840 0.5kb downstream 0.5kb downstream 500 false chr3: 42440618-42441117 Medicago truncatula
Medtr3g092840 1.0kb upstream 1.0kb upstream 3316 true chr3: 42441118-42444433 Medicago truncatula
Medtr3g092840 1.0kb upstream 1.0kb upstream 1000 false chr3: 42443434-42444433 Medicago truncatula
Medtr3g092840 1.0kb downstream 1.0kb downstream 3316 true chr3: 42440118-42443433 Medicago truncatula
Medtr3g092840 1.0kb downstream 1.0kb downstream 1000 false chr3: 42440118-42441117 Medicago truncatula
Medtr3g092840 2.0kb upstream 2.0kb upstream 4316 true chr3: 42441118-42445433 Medicago truncatula
Medtr3g092840 2.0kb upstream 2.0kb upstream 2000 false chr3: 42443434-42445433 Medicago truncatula
Medtr3g092840 2.0kb downstream 2.0kb downstream 4316 true chr3: 42439118-42443433 Medicago truncatula
Medtr3g092840 2.0kb downstream 2.0kb downstream 2000 false chr3: 42439118-42441117 Medicago truncatula
Medtr3g092840 5.0kb upstream 5.0kb upstream 7316 true chr3: 42441118-42448433 Medicago truncatula
Medtr3g092840 5.0kb upstream 5.0kb upstream 5000 false chr3: 42443434-42448433 Medicago truncatula
Medtr3g092840 5.0kb downstream 5.0kb downstream 7316 true chr3: 42436118-42443433 Medicago truncatula
Medtr3g092840 5.0kb downstream 5.0kb downstream 5000 false chr3: 42436118-42441117 Medicago truncatula
Medtr3g092840 10.0kb upstream 10.0kb upstream 12316 true chr3: 42441118-42453433 Medicago truncatula
Medtr3g092840 10.0kb upstream 10.0kb upstream 10000 false chr3: 42443434-42453433 Medicago truncatula
Medtr3g092840 10.0kb downstream 10.0kb downstream 12316 true chr3: 42431118-42443433 Medicago truncatula
Medtr3g092840 10.0kb downstream 10.0kb downstream 10000 false chr3: 42431118-42441117 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301131 5265 Fabidae View MSA
124066004 5270 Rosid View MSA
123745660 5271 Pentapetalae View MSA
122791660 5272 Eudicot View MSA
122050418 5273 Angiosperm View MSA
121348109 5274 Embryophyte View MSA
123423806 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.876        
cufflinks 5.975        
cufflinks 5.003        
cufflinks 13.192     High High
cufflinks 6.169        
cufflinks 7.944        
cufflinks 5.462        
cufflinks 5.01        
cufflinks 8.475        

0 Strain