Gene : Medtr3g083920 M. truncatula Mt4.0v1
Defline:  (1 of 23) 2.3.1.74 - Naringenin-chalcone synthase / Flavonone synthase Description:  chalcone and stilbene synthase family protein
Genomic Order:  4349 Name:  ? Medtr3g083920
Secondary Identifier:  ? PAC:31059592
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY1F-FLAVSYN Medicago truncatula pathologic  
Mtruncatula PWY-6787 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g083920 0.5kb upstream 0.5kb upstream 2153 true chr3: 37862361-37864513 Medicago truncatula
Medtr3g083920 0.5kb upstream 0.5kb upstream 500 false chr3: 37864014-37864513 Medicago truncatula
Medtr3g083920 0.5kb downstream 0.5kb downstream 2153 true chr3: 37861861-37864013 Medicago truncatula
Medtr3g083920 0.5kb downstream 0.5kb downstream 500 false chr3: 37861861-37862360 Medicago truncatula
Medtr3g083920 1.0kb upstream 1.0kb upstream 2653 true chr3: 37862361-37865013 Medicago truncatula
Medtr3g083920 1.0kb upstream 1.0kb upstream 1000 false chr3: 37864014-37865013 Medicago truncatula
Medtr3g083920 1.0kb downstream 1.0kb downstream 2653 true chr3: 37861361-37864013 Medicago truncatula
Medtr3g083920 1.0kb downstream 1.0kb downstream 1000 false chr3: 37861361-37862360 Medicago truncatula
Medtr3g083920 2.0kb upstream 2.0kb upstream 3653 true chr3: 37862361-37866013 Medicago truncatula
Medtr3g083920 2.0kb upstream 2.0kb upstream 2000 false chr3: 37864014-37866013 Medicago truncatula
Medtr3g083920 2.0kb downstream 2.0kb downstream 3653 true chr3: 37860361-37864013 Medicago truncatula
Medtr3g083920 2.0kb downstream 2.0kb downstream 2000 false chr3: 37860361-37862360 Medicago truncatula
Medtr3g083920 5.0kb upstream 5.0kb upstream 6653 true chr3: 37862361-37869013 Medicago truncatula
Medtr3g083920 5.0kb upstream 5.0kb upstream 5000 false chr3: 37864014-37869013 Medicago truncatula
Medtr3g083920 5.0kb downstream 5.0kb downstream 6653 true chr3: 37857361-37864013 Medicago truncatula
Medtr3g083920 5.0kb downstream 5.0kb downstream 5000 false chr3: 37857361-37862360 Medicago truncatula
Medtr3g083920 10.0kb upstream 10.0kb upstream 11653 true chr3: 37862361-37874013 Medicago truncatula
Medtr3g083920 10.0kb upstream 10.0kb upstream 10000 false chr3: 37864014-37874013 Medicago truncatula
Medtr3g083920 10.0kb downstream 10.0kb downstream 11653 true chr3: 37852361-37864013 Medicago truncatula
Medtr3g083920 10.0kb downstream 10.0kb downstream 10000 false chr3: 37852361-37862360 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316250 5265 Fabidae View MSA
124075116 5270 Rosid View MSA
123749866 5271 Pentapetalae View MSA
122798259 5272 Eudicot View MSA
122051180 5273 Angiosperm View MSA
121350627 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.868        
cufflinks 0.091        
cufflinks 0.032     Low Low
cufflinks 3.632        
cufflinks 0.102        
cufflinks 3.064        
cufflinks 2.289        
cufflinks 0.01     Low Low
cufflinks 5.483       High

0 Strain