Gene : Medtr3g084860 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23270//PTHR23270:SF9 - PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 Description:  S1 RNA-binding domain protein
Genomic Order:  4413 Name:  ? Medtr3g084860
Secondary Identifier:  ? PAC:31053743
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084860 0.5kb upstream 0.5kb upstream 6216 true chr3: 38331518-38337733 Medicago truncatula
Medtr3g084860 0.5kb upstream 0.5kb upstream 500 false chr3: 38331518-38332017 Medicago truncatula
Medtr3g084860 0.5kb downstream 0.5kb downstream 6216 true chr3: 38332018-38338233 Medicago truncatula
Medtr3g084860 0.5kb downstream 0.5kb downstream 500 false chr3: 38337734-38338233 Medicago truncatula
Medtr3g084860 1.0kb upstream 1.0kb upstream 6716 true chr3: 38331018-38337733 Medicago truncatula
Medtr3g084860 1.0kb upstream 1.0kb upstream 1000 false chr3: 38331018-38332017 Medicago truncatula
Medtr3g084860 1.0kb downstream 1.0kb downstream 6716 true chr3: 38332018-38338733 Medicago truncatula
Medtr3g084860 1.0kb downstream 1.0kb downstream 1000 false chr3: 38337734-38338733 Medicago truncatula
Medtr3g084860 2.0kb upstream 2.0kb upstream 7716 true chr3: 38330018-38337733 Medicago truncatula
Medtr3g084860 2.0kb upstream 2.0kb upstream 2000 false chr3: 38330018-38332017 Medicago truncatula
Medtr3g084860 2.0kb downstream 2.0kb downstream 7716 true chr3: 38332018-38339733 Medicago truncatula
Medtr3g084860 2.0kb downstream 2.0kb downstream 2000 false chr3: 38337734-38339733 Medicago truncatula
Medtr3g084860 5.0kb upstream 5.0kb upstream 10716 true chr3: 38327018-38337733 Medicago truncatula
Medtr3g084860 5.0kb upstream 5.0kb upstream 5000 false chr3: 38327018-38332017 Medicago truncatula
Medtr3g084860 5.0kb downstream 5.0kb downstream 10716 true chr3: 38332018-38342733 Medicago truncatula
Medtr3g084860 5.0kb downstream 5.0kb downstream 5000 false chr3: 38337734-38342733 Medicago truncatula
Medtr3g084860 10.0kb upstream 10.0kb upstream 15716 true chr3: 38322018-38337733 Medicago truncatula
Medtr3g084860 10.0kb upstream 10.0kb upstream 10000 false chr3: 38322018-38332017 Medicago truncatula
Medtr3g084860 10.0kb downstream 10.0kb downstream 15716 true chr3: 38332018-38347733 Medicago truncatula
Medtr3g084860 10.0kb downstream 10.0kb downstream 10000 false chr3: 38337734-38347733 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301856 5265 Fabidae View MSA
124064090 5270 Rosid View MSA
123737111 5271 Pentapetalae View MSA
122791346 5272 Eudicot View MSA
122043466 5273 Angiosperm View MSA
121344790 5274 Embryophyte View MSA
123423896 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.624        
cufflinks 14.542     High High
cufflinks 12.252     High  
cufflinks 1.571        
cufflinks 17.662     High High
cufflinks 0.809       Low
cufflinks 1.79        
cufflinks 13.331     High  
cufflinks 1.726        

0 Strain