Gene : Medtr3g085620 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12419//PTHR12419:SF24 - OTU DOMAIN CONTAINING PROTEIN Description:  OTU-like cysteine protease
Genomic Order:  4470 Name:  ? Medtr3g085620
Secondary Identifier:  ? PAC:31058890
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g085620 0.5kb upstream 0.5kb upstream 3220 true chr3: 38710689-38713908 Medicago truncatula
Medtr3g085620 0.5kb upstream 0.5kb upstream 500 false chr3: 38710689-38711188 Medicago truncatula
Medtr3g085620 0.5kb downstream 0.5kb downstream 3220 true chr3: 38711189-38714408 Medicago truncatula
Medtr3g085620 0.5kb downstream 0.5kb downstream 500 false chr3: 38713909-38714408 Medicago truncatula
Medtr3g085620 1.0kb upstream 1.0kb upstream 3720 true chr3: 38710189-38713908 Medicago truncatula
Medtr3g085620 1.0kb upstream 1.0kb upstream 1000 false chr3: 38710189-38711188 Medicago truncatula
Medtr3g085620 1.0kb downstream 1.0kb downstream 3720 true chr3: 38711189-38714908 Medicago truncatula
Medtr3g085620 1.0kb downstream 1.0kb downstream 1000 false chr3: 38713909-38714908 Medicago truncatula
Medtr3g085620 2.0kb upstream 2.0kb upstream 4720 true chr3: 38709189-38713908 Medicago truncatula
Medtr3g085620 2.0kb upstream 2.0kb upstream 2000 false chr3: 38709189-38711188 Medicago truncatula
Medtr3g085620 2.0kb downstream 2.0kb downstream 4720 true chr3: 38711189-38715908 Medicago truncatula
Medtr3g085620 2.0kb downstream 2.0kb downstream 2000 false chr3: 38713909-38715908 Medicago truncatula
Medtr3g085620 5.0kb upstream 5.0kb upstream 7720 true chr3: 38706189-38713908 Medicago truncatula
Medtr3g085620 5.0kb upstream 5.0kb upstream 5000 false chr3: 38706189-38711188 Medicago truncatula
Medtr3g085620 5.0kb downstream 5.0kb downstream 7720 true chr3: 38711189-38718908 Medicago truncatula
Medtr3g085620 5.0kb downstream 5.0kb downstream 5000 false chr3: 38713909-38718908 Medicago truncatula
Medtr3g085620 10.0kb upstream 10.0kb upstream 12720 true chr3: 38701189-38713908 Medicago truncatula
Medtr3g085620 10.0kb upstream 10.0kb upstream 10000 false chr3: 38701189-38711188 Medicago truncatula
Medtr3g085620 10.0kb downstream 10.0kb downstream 12720 true chr3: 38711189-38723908 Medicago truncatula
Medtr3g085620 10.0kb downstream 10.0kb downstream 10000 false chr3: 38713909-38723908 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074941 5270 Rosid View MSA
122300144 5265 Fabidae View MSA
123749661 5271 Pentapetalae View MSA
122794711 5272 Eudicot View MSA
122048756 5273 Angiosperm View MSA
121349238 5274 Embryophyte View MSA
123428485 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.897        
cufflinks 1.189        
cufflinks 0.078        
cufflinks 1.22        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.211        
cufflinks 0.685        
cufflinks 0.142        

0 Strain