Gene : Medtr3g085400 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR12210:SF13 - CTD SMALL PHOSPHATASE-LIKE PROTEIN 2 Description:  NLI interacting factor-like phosphatase
Genomic Order:  4452 Name:  ? Medtr3g085400
Secondary Identifier:  ? PAC:31059679
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g085400 0.5kb upstream 0.5kb upstream 5330 true chr3: 38593814-38599143 Medicago truncatula
Medtr3g085400 0.5kb upstream 0.5kb upstream 500 false chr3: 38598644-38599143 Medicago truncatula
Medtr3g085400 0.5kb downstream 0.5kb downstream 5330 true chr3: 38593314-38598643 Medicago truncatula
Medtr3g085400 0.5kb downstream 0.5kb downstream 500 false chr3: 38593314-38593813 Medicago truncatula
Medtr3g085400 1.0kb upstream 1.0kb upstream 5830 true chr3: 38593814-38599643 Medicago truncatula
Medtr3g085400 1.0kb upstream 1.0kb upstream 1000 false chr3: 38598644-38599643 Medicago truncatula
Medtr3g085400 1.0kb downstream 1.0kb downstream 5830 true chr3: 38592814-38598643 Medicago truncatula
Medtr3g085400 1.0kb downstream 1.0kb downstream 1000 false chr3: 38592814-38593813 Medicago truncatula
Medtr3g085400 2.0kb upstream 2.0kb upstream 6830 true chr3: 38593814-38600643 Medicago truncatula
Medtr3g085400 2.0kb upstream 2.0kb upstream 2000 false chr3: 38598644-38600643 Medicago truncatula
Medtr3g085400 2.0kb downstream 2.0kb downstream 6830 true chr3: 38591814-38598643 Medicago truncatula
Medtr3g085400 2.0kb downstream 2.0kb downstream 2000 false chr3: 38591814-38593813 Medicago truncatula
Medtr3g085400 5.0kb upstream 5.0kb upstream 9830 true chr3: 38593814-38603643 Medicago truncatula
Medtr3g085400 5.0kb upstream 5.0kb upstream 5000 false chr3: 38598644-38603643 Medicago truncatula
Medtr3g085400 5.0kb downstream 5.0kb downstream 9830 true chr3: 38588814-38598643 Medicago truncatula
Medtr3g085400 5.0kb downstream 5.0kb downstream 5000 false chr3: 38588814-38593813 Medicago truncatula
Medtr3g085400 10.0kb upstream 10.0kb upstream 14830 true chr3: 38593814-38608643 Medicago truncatula
Medtr3g085400 10.0kb upstream 10.0kb upstream 10000 false chr3: 38598644-38608643 Medicago truncatula
Medtr3g085400 10.0kb downstream 10.0kb downstream 14830 true chr3: 38583814-38598643 Medicago truncatula
Medtr3g085400 10.0kb downstream 10.0kb downstream 10000 false chr3: 38583814-38593813 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313265 5265 Fabidae View MSA
124070783 5270 Rosid View MSA
123745069 5271 Pentapetalae View MSA
122794821 5272 Eudicot View MSA
122048249 5273 Angiosperm View MSA
123429149 5275 Viridiplantae View MSA
121310904 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.155     High High
cufflinks 4.576        
cufflinks 7.099        
cufflinks 7.098        
cufflinks 4.338       Low
cufflinks 4.183       Low
cufflinks 7.961        
cufflinks 5.006        
cufflinks 7.461        

0 Strain