Gene : Medtr3g114150 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF01028//PF02919 - Eukaryotic DNA topoisomerase I, catalytic core (Topoisom_I) // Eukaryotic DNA topoisomerase I, DNA binding fragment (Topoisom_I_N) Description:  DNA topoisomerase I
Genomic Order:  6458 Name:  ? Medtr3g114150
Secondary Identifier:  ? PAC:31061431
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g114150 0.5kb upstream 0.5kb upstream 6026 true chr3: 53312494-53318519 Medicago truncatula
Medtr3g114150 0.5kb upstream 0.5kb upstream 500 false chr3: 53312494-53312993 Medicago truncatula
Medtr3g114150 0.5kb downstream 0.5kb downstream 6026 true chr3: 53312994-53319019 Medicago truncatula
Medtr3g114150 0.5kb downstream 0.5kb downstream 500 false chr3: 53318520-53319019 Medicago truncatula
Medtr3g114150 1.0kb upstream 1.0kb upstream 6526 true chr3: 53311994-53318519 Medicago truncatula
Medtr3g114150 1.0kb upstream 1.0kb upstream 1000 false chr3: 53311994-53312993 Medicago truncatula
Medtr3g114150 1.0kb downstream 1.0kb downstream 6526 true chr3: 53312994-53319519 Medicago truncatula
Medtr3g114150 1.0kb downstream 1.0kb downstream 1000 false chr3: 53318520-53319519 Medicago truncatula
Medtr3g114150 2.0kb upstream 2.0kb upstream 7526 true chr3: 53310994-53318519 Medicago truncatula
Medtr3g114150 2.0kb upstream 2.0kb upstream 2000 false chr3: 53310994-53312993 Medicago truncatula
Medtr3g114150 2.0kb downstream 2.0kb downstream 7526 true chr3: 53312994-53320519 Medicago truncatula
Medtr3g114150 2.0kb downstream 2.0kb downstream 2000 false chr3: 53318520-53320519 Medicago truncatula
Medtr3g114150 5.0kb upstream 5.0kb upstream 10526 true chr3: 53307994-53318519 Medicago truncatula
Medtr3g114150 5.0kb upstream 5.0kb upstream 5000 false chr3: 53307994-53312993 Medicago truncatula
Medtr3g114150 5.0kb downstream 5.0kb downstream 10526 true chr3: 53312994-53323519 Medicago truncatula
Medtr3g114150 5.0kb downstream 5.0kb downstream 5000 false chr3: 53318520-53323519 Medicago truncatula
Medtr3g114150 10.0kb upstream 10.0kb upstream 15526 true chr3: 53302994-53318519 Medicago truncatula
Medtr3g114150 10.0kb upstream 10.0kb upstream 10000 false chr3: 53302994-53312993 Medicago truncatula
Medtr3g114150 10.0kb downstream 10.0kb downstream 15526 true chr3: 53312994-53328519 Medicago truncatula
Medtr3g114150 10.0kb downstream 10.0kb downstream 10000 false chr3: 53318520-53328519 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316350 5265 Fabidae View MSA
124041467 5270 Rosid View MSA
123612293 5271 Pentapetalae View MSA
122646802 5272 Eudicot View MSA
122051267 5273 Angiosperm View MSA
121312384 5274 Embryophyte View MSA
123428492 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.04     Low  
cufflinks 0.014     Low  
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.139       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.037     Low  
cufflinks 0.013     Low  

0 Strain