Gene : Medtr3g115450 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF03176 - MMPL family (MMPL) Description:  niemann-pick C1-like protein
Genomic Order:  6544 Name:  ? Medtr3g115450
Secondary Identifier:  ? PAC:31060962
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g115450 0.5kb upstream 0.5kb upstream 18068 true chr3: 53989443-54007510 Medicago truncatula
Medtr3g115450 0.5kb upstream 0.5kb upstream 500 false chr3: 54007011-54007510 Medicago truncatula
Medtr3g115450 0.5kb downstream 0.5kb downstream 18068 true chr3: 53988943-54007010 Medicago truncatula
Medtr3g115450 0.5kb downstream 0.5kb downstream 500 false chr3: 53988943-53989442 Medicago truncatula
Medtr3g115450 1.0kb upstream 1.0kb upstream 18568 true chr3: 53989443-54008010 Medicago truncatula
Medtr3g115450 1.0kb upstream 1.0kb upstream 1000 false chr3: 54007011-54008010 Medicago truncatula
Medtr3g115450 1.0kb downstream 1.0kb downstream 18568 true chr3: 53988443-54007010 Medicago truncatula
Medtr3g115450 1.0kb downstream 1.0kb downstream 1000 false chr3: 53988443-53989442 Medicago truncatula
Medtr3g115450 2.0kb upstream 2.0kb upstream 19568 true chr3: 53989443-54009010 Medicago truncatula
Medtr3g115450 2.0kb upstream 2.0kb upstream 2000 false chr3: 54007011-54009010 Medicago truncatula
Medtr3g115450 2.0kb downstream 2.0kb downstream 19568 true chr3: 53987443-54007010 Medicago truncatula
Medtr3g115450 2.0kb downstream 2.0kb downstream 2000 false chr3: 53987443-53989442 Medicago truncatula
Medtr3g115450 5.0kb upstream 5.0kb upstream 22568 true chr3: 53989443-54012010 Medicago truncatula
Medtr3g115450 5.0kb upstream 5.0kb upstream 5000 false chr3: 54007011-54012010 Medicago truncatula
Medtr3g115450 5.0kb downstream 5.0kb downstream 22568 true chr3: 53984443-54007010 Medicago truncatula
Medtr3g115450 5.0kb downstream 5.0kb downstream 5000 false chr3: 53984443-53989442 Medicago truncatula
Medtr3g115450 10.0kb upstream 10.0kb upstream 27568 true chr3: 53989443-54017010 Medicago truncatula
Medtr3g115450 10.0kb upstream 10.0kb upstream 10000 false chr3: 54007011-54017010 Medicago truncatula
Medtr3g115450 10.0kb downstream 10.0kb downstream 27568 true chr3: 53979443-54007010 Medicago truncatula
Medtr3g115450 10.0kb downstream 10.0kb downstream 10000 false chr3: 53979443-53989442 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312597 5265 Fabidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.483       High
cufflinks 0.594        
cufflinks 0.5        
cufflinks 0.057     Low Low
cufflinks 0.723        
cufflinks 0.027     Low Low
cufflinks 0.184        
cufflinks 0.486        
cufflinks 0.28        

0 Strain