Gene : Medtr3g115980 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21049:SF1 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1A Description:  ribophorin I family protein
Genomic Order:  6570 Name:  ? Medtr3g115980
Secondary Identifier:  ? PAC:31054993
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g115980 0.5kb upstream 0.5kb upstream 7011 true chr3: 54222313-54229323 Medicago truncatula
Medtr3g115980 0.5kb upstream 0.5kb upstream 500 false chr3: 54222313-54222812 Medicago truncatula
Medtr3g115980 0.5kb downstream 0.5kb downstream 7011 true chr3: 54222813-54229823 Medicago truncatula
Medtr3g115980 0.5kb downstream 0.5kb downstream 500 false chr3: 54229324-54229823 Medicago truncatula
Medtr3g115980 1.0kb upstream 1.0kb upstream 7511 true chr3: 54221813-54229323 Medicago truncatula
Medtr3g115980 1.0kb upstream 1.0kb upstream 1000 false chr3: 54221813-54222812 Medicago truncatula
Medtr3g115980 1.0kb downstream 1.0kb downstream 7511 true chr3: 54222813-54230323 Medicago truncatula
Medtr3g115980 1.0kb downstream 1.0kb downstream 1000 false chr3: 54229324-54230323 Medicago truncatula
Medtr3g115980 2.0kb upstream 2.0kb upstream 8511 true chr3: 54220813-54229323 Medicago truncatula
Medtr3g115980 2.0kb upstream 2.0kb upstream 2000 false chr3: 54220813-54222812 Medicago truncatula
Medtr3g115980 2.0kb downstream 2.0kb downstream 8511 true chr3: 54222813-54231323 Medicago truncatula
Medtr3g115980 2.0kb downstream 2.0kb downstream 2000 false chr3: 54229324-54231323 Medicago truncatula
Medtr3g115980 5.0kb upstream 5.0kb upstream 11511 true chr3: 54217813-54229323 Medicago truncatula
Medtr3g115980 5.0kb upstream 5.0kb upstream 5000 false chr3: 54217813-54222812 Medicago truncatula
Medtr3g115980 5.0kb downstream 5.0kb downstream 11511 true chr3: 54222813-54234323 Medicago truncatula
Medtr3g115980 5.0kb downstream 5.0kb downstream 5000 false chr3: 54229324-54234323 Medicago truncatula
Medtr3g115980 10.0kb upstream 10.0kb upstream 16511 true chr3: 54212813-54229323 Medicago truncatula
Medtr3g115980 10.0kb upstream 10.0kb upstream 10000 false chr3: 54212813-54222812 Medicago truncatula
Medtr3g115980 10.0kb downstream 10.0kb downstream 16511 true chr3: 54222813-54239323 Medicago truncatula
Medtr3g115980 10.0kb downstream 10.0kb downstream 10000 false chr3: 54229324-54239323 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308076 5265 Fabidae View MSA
124068967 5270 Rosid View MSA
123737223 5271 Pentapetalae View MSA
122791942 5272 Eudicot View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.201        
cufflinks 8.107        
cufflinks 5.576        
cufflinks 2.971        
cufflinks 7.809        
cufflinks 1.191       Low
cufflinks 5.916        
cufflinks 5.84        
cufflinks 7.421        

0 Strain