Gene : Medtr3g116130 M. truncatula Mt4.0v1
Defline:  (1 of 5) KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  6583 Name:  ? Medtr3g116130
Secondary Identifier:  ? PAC:31061590
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g116130 0.5kb upstream 0.5kb upstream 5773 true chr3: 54296178-54301950 Medicago truncatula
Medtr3g116130 0.5kb upstream 0.5kb upstream 500 false chr3: 54301451-54301950 Medicago truncatula
Medtr3g116130 0.5kb downstream 0.5kb downstream 5773 true chr3: 54295678-54301450 Medicago truncatula
Medtr3g116130 0.5kb downstream 0.5kb downstream 500 false chr3: 54295678-54296177 Medicago truncatula
Medtr3g116130 1.0kb upstream 1.0kb upstream 6273 true chr3: 54296178-54302450 Medicago truncatula
Medtr3g116130 1.0kb upstream 1.0kb upstream 1000 false chr3: 54301451-54302450 Medicago truncatula
Medtr3g116130 1.0kb downstream 1.0kb downstream 6273 true chr3: 54295178-54301450 Medicago truncatula
Medtr3g116130 1.0kb downstream 1.0kb downstream 1000 false chr3: 54295178-54296177 Medicago truncatula
Medtr3g116130 2.0kb upstream 2.0kb upstream 7273 true chr3: 54296178-54303450 Medicago truncatula
Medtr3g116130 2.0kb upstream 2.0kb upstream 2000 false chr3: 54301451-54303450 Medicago truncatula
Medtr3g116130 2.0kb downstream 2.0kb downstream 7273 true chr3: 54294178-54301450 Medicago truncatula
Medtr3g116130 2.0kb downstream 2.0kb downstream 2000 false chr3: 54294178-54296177 Medicago truncatula
Medtr3g116130 5.0kb upstream 5.0kb upstream 10273 true chr3: 54296178-54306450 Medicago truncatula
Medtr3g116130 5.0kb upstream 5.0kb upstream 5000 false chr3: 54301451-54306450 Medicago truncatula
Medtr3g116130 5.0kb downstream 5.0kb downstream 10273 true chr3: 54291178-54301450 Medicago truncatula
Medtr3g116130 5.0kb downstream 5.0kb downstream 5000 false chr3: 54291178-54296177 Medicago truncatula
Medtr3g116130 10.0kb upstream 10.0kb upstream 15273 true chr3: 54296178-54311450 Medicago truncatula
Medtr3g116130 10.0kb upstream 10.0kb upstream 10000 false chr3: 54301451-54311450 Medicago truncatula
Medtr3g116130 10.0kb downstream 10.0kb downstream 15273 true chr3: 54286178-54301450 Medicago truncatula
Medtr3g116130 10.0kb downstream 10.0kb downstream 10000 false chr3: 54286178-54296177 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314602 5265 Fabidae View MSA
124065474 5270 Rosid View MSA
123753453 5271 Pentapetalae View MSA
122797686 5272 Eudicot View MSA
122043296 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121350049 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.708        
cufflinks 6.119        
cufflinks 8.465       High
cufflinks 5.657        
cufflinks 6.532        
cufflinks 3.873       Low
cufflinks 5.085        
cufflinks 6.852        
cufflinks 3.859       Low

0 Strain