Gene : Medtr3g110195 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10543//PTHR10543:SF30 - BETA-CAROTENE DIOXYGENASE Description:  retinal pigment epithelial membrane protein
Genomic Order:  6191 Name:  ? Medtr3g110195
Secondary Identifier:  ? PAC:31061282
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g110195 0.5kb upstream 0.5kb upstream 5298 true chr3: 51196407-51201704 Medicago truncatula
Medtr3g110195 0.5kb upstream 0.5kb upstream 500 false chr3: 51201205-51201704 Medicago truncatula
Medtr3g110195 0.5kb downstream 0.5kb downstream 5298 true chr3: 51195907-51201204 Medicago truncatula
Medtr3g110195 0.5kb downstream 0.5kb downstream 500 false chr3: 51195907-51196406 Medicago truncatula
Medtr3g110195 1.0kb upstream 1.0kb upstream 5798 true chr3: 51196407-51202204 Medicago truncatula
Medtr3g110195 1.0kb upstream 1.0kb upstream 1000 false chr3: 51201205-51202204 Medicago truncatula
Medtr3g110195 1.0kb downstream 1.0kb downstream 5798 true chr3: 51195407-51201204 Medicago truncatula
Medtr3g110195 1.0kb downstream 1.0kb downstream 1000 false chr3: 51195407-51196406 Medicago truncatula
Medtr3g110195 2.0kb upstream 2.0kb upstream 6798 true chr3: 51196407-51203204 Medicago truncatula
Medtr3g110195 2.0kb upstream 2.0kb upstream 2000 false chr3: 51201205-51203204 Medicago truncatula
Medtr3g110195 2.0kb downstream 2.0kb downstream 6798 true chr3: 51194407-51201204 Medicago truncatula
Medtr3g110195 2.0kb downstream 2.0kb downstream 2000 false chr3: 51194407-51196406 Medicago truncatula
Medtr3g110195 5.0kb upstream 5.0kb upstream 9798 true chr3: 51196407-51206204 Medicago truncatula
Medtr3g110195 5.0kb upstream 5.0kb upstream 5000 false chr3: 51201205-51206204 Medicago truncatula
Medtr3g110195 5.0kb downstream 5.0kb downstream 9798 true chr3: 51191407-51201204 Medicago truncatula
Medtr3g110195 5.0kb downstream 5.0kb downstream 5000 false chr3: 51191407-51196406 Medicago truncatula
Medtr3g110195 10.0kb upstream 10.0kb upstream 14798 true chr3: 51196407-51211204 Medicago truncatula
Medtr3g110195 10.0kb upstream 10.0kb upstream 10000 false chr3: 51201205-51211204 Medicago truncatula
Medtr3g110195 10.0kb downstream 10.0kb downstream 14798 true chr3: 51186407-51201204 Medicago truncatula
Medtr3g110195 10.0kb downstream 10.0kb downstream 10000 false chr3: 51186407-51196406 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302721 5265 Fabidae View MSA
124074147 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.259        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.088        
cufflinks 0.004     Low Low
cufflinks 0.102     Low  
cufflinks 0.43       High
cufflinks 0.01     Low  
cufflinks 0.289        

0 Strain