Gene : Medtr3g111890 M. truncatula Mt4.0v1
Defline:  (1 of 3) 3.2.2.21 - DNA-3-methyladenine glycosylase II / DNA-3-methyladenine glycosidase II Description:  HhH-GPD base excision DNA repair family protein
Genomic Order:  6334 Name:  ? Medtr3g111890
Secondary Identifier:  ? PAC:31054090
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g111890 0.5kb upstream 0.5kb upstream 5028 true chr3: 52366773-52371800 Medicago truncatula
Medtr3g111890 0.5kb upstream 0.5kb upstream 500 false chr3: 52366773-52367272 Medicago truncatula
Medtr3g111890 0.5kb downstream 0.5kb downstream 5028 true chr3: 52367273-52372300 Medicago truncatula
Medtr3g111890 0.5kb downstream 0.5kb downstream 500 false chr3: 52371801-52372300 Medicago truncatula
Medtr3g111890 1.0kb upstream 1.0kb upstream 5528 true chr3: 52366273-52371800 Medicago truncatula
Medtr3g111890 1.0kb upstream 1.0kb upstream 1000 false chr3: 52366273-52367272 Medicago truncatula
Medtr3g111890 1.0kb downstream 1.0kb downstream 5528 true chr3: 52367273-52372800 Medicago truncatula
Medtr3g111890 1.0kb downstream 1.0kb downstream 1000 false chr3: 52371801-52372800 Medicago truncatula
Medtr3g111890 2.0kb upstream 2.0kb upstream 6528 true chr3: 52365273-52371800 Medicago truncatula
Medtr3g111890 2.0kb upstream 2.0kb upstream 2000 false chr3: 52365273-52367272 Medicago truncatula
Medtr3g111890 2.0kb downstream 2.0kb downstream 6528 true chr3: 52367273-52373800 Medicago truncatula
Medtr3g111890 2.0kb downstream 2.0kb downstream 2000 false chr3: 52371801-52373800 Medicago truncatula
Medtr3g111890 5.0kb upstream 5.0kb upstream 9528 true chr3: 52362273-52371800 Medicago truncatula
Medtr3g111890 5.0kb upstream 5.0kb upstream 5000 false chr3: 52362273-52367272 Medicago truncatula
Medtr3g111890 5.0kb downstream 5.0kb downstream 9528 true chr3: 52367273-52376800 Medicago truncatula
Medtr3g111890 5.0kb downstream 5.0kb downstream 5000 false chr3: 52371801-52376800 Medicago truncatula
Medtr3g111890 10.0kb upstream 10.0kb upstream 14528 true chr3: 52357273-52371800 Medicago truncatula
Medtr3g111890 10.0kb upstream 10.0kb upstream 10000 false chr3: 52357273-52367272 Medicago truncatula
Medtr3g111890 10.0kb downstream 10.0kb downstream 14528 true chr3: 52367273-52381800 Medicago truncatula
Medtr3g111890 10.0kb downstream 10.0kb downstream 10000 false chr3: 52371801-52381800 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027501 5273 Angiosperm View MSA
122307747 5265 Fabidae View MSA
124069073 5270 Rosid View MSA
123749896 5271 Pentapetalae View MSA
122796676 5272 Eudicot View MSA
121350563 5274 Embryophyte View MSA
123425595 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.268        
cufflinks 3.052        
cufflinks 3.361        
cufflinks 5.389       High
cufflinks 3.664        
cufflinks 3.792        
cufflinks 4.483        
cufflinks 2.482       Low
cufflinks 6.334       High

0 Strain