Gene : Medtr3g112310 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21091:SF18 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I Description:  ribosomal RNA small subunit methyltransferase I
Genomic Order:  6371 Name:  ? Medtr3g112310
Secondary Identifier:  ? PAC:31058972
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g112310 0.5kb upstream 0.5kb upstream 5129 true chr3: 52596427-52601555 Medicago truncatula
Medtr3g112310 0.5kb upstream 0.5kb upstream 500 false chr3: 52596427-52596926 Medicago truncatula
Medtr3g112310 0.5kb downstream 0.5kb downstream 5129 true chr3: 52596927-52602055 Medicago truncatula
Medtr3g112310 0.5kb downstream 0.5kb downstream 500 false chr3: 52601556-52602055 Medicago truncatula
Medtr3g112310 1.0kb upstream 1.0kb upstream 5629 true chr3: 52595927-52601555 Medicago truncatula
Medtr3g112310 1.0kb upstream 1.0kb upstream 1000 false chr3: 52595927-52596926 Medicago truncatula
Medtr3g112310 1.0kb downstream 1.0kb downstream 5629 true chr3: 52596927-52602555 Medicago truncatula
Medtr3g112310 1.0kb downstream 1.0kb downstream 1000 false chr3: 52601556-52602555 Medicago truncatula
Medtr3g112310 2.0kb upstream 2.0kb upstream 6629 true chr3: 52594927-52601555 Medicago truncatula
Medtr3g112310 2.0kb upstream 2.0kb upstream 2000 false chr3: 52594927-52596926 Medicago truncatula
Medtr3g112310 2.0kb downstream 2.0kb downstream 6629 true chr3: 52596927-52603555 Medicago truncatula
Medtr3g112310 2.0kb downstream 2.0kb downstream 2000 false chr3: 52601556-52603555 Medicago truncatula
Medtr3g112310 5.0kb upstream 5.0kb upstream 9629 true chr3: 52591927-52601555 Medicago truncatula
Medtr3g112310 5.0kb upstream 5.0kb upstream 5000 false chr3: 52591927-52596926 Medicago truncatula
Medtr3g112310 5.0kb downstream 5.0kb downstream 9629 true chr3: 52596927-52606555 Medicago truncatula
Medtr3g112310 5.0kb downstream 5.0kb downstream 5000 false chr3: 52601556-52606555 Medicago truncatula
Medtr3g112310 10.0kb upstream 10.0kb upstream 14629 true chr3: 52586927-52601555 Medicago truncatula
Medtr3g112310 10.0kb upstream 10.0kb upstream 10000 false chr3: 52586927-52596926 Medicago truncatula
Medtr3g112310 10.0kb downstream 10.0kb downstream 14629 true chr3: 52596927-52611555 Medicago truncatula
Medtr3g112310 10.0kb downstream 10.0kb downstream 10000 false chr3: 52601556-52611555 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307010 5265 Fabidae View MSA
124062180 5270 Rosid View MSA
123741052 5271 Pentapetalae View MSA
122786797 5272 Eudicot View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.077        
cufflinks 0.374        
cufflinks 0.566        
cufflinks 0.075        
cufflinks 0.821       High
cufflinks 0.004     Low Low
cufflinks 0.091        
cufflinks 0.488        
cufflinks 0.132        

0 Strain