Gene : Medtr3g103990 M. truncatula Mt4.0v1
Defline:  (1 of 492) PF01535 - PPR repeat (PPR) Description:  PPR repeat protein
Genomic Order:  5713 Name:  ? Medtr3g103990
Secondary Identifier:  ? PAC:31057526
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g103990 0.5kb upstream 0.5kb upstream 1130 true chr3: 47916282-47917411 Medicago truncatula
Medtr3g103990 0.5kb upstream 0.5kb upstream 500 false chr3: 47916282-47916781 Medicago truncatula
Medtr3g103990 0.5kb downstream 0.5kb downstream 1130 true chr3: 47916782-47917911 Medicago truncatula
Medtr3g103990 0.5kb downstream 0.5kb downstream 500 false chr3: 47917412-47917911 Medicago truncatula
Medtr3g103990 1.0kb upstream 1.0kb upstream 1630 true chr3: 47915782-47917411 Medicago truncatula
Medtr3g103990 1.0kb upstream 1.0kb upstream 1000 false chr3: 47915782-47916781 Medicago truncatula
Medtr3g103990 1.0kb downstream 1.0kb downstream 1630 true chr3: 47916782-47918411 Medicago truncatula
Medtr3g103990 1.0kb downstream 1.0kb downstream 1000 false chr3: 47917412-47918411 Medicago truncatula
Medtr3g103990 2.0kb upstream 2.0kb upstream 2630 true chr3: 47914782-47917411 Medicago truncatula
Medtr3g103990 2.0kb upstream 2.0kb upstream 2000 false chr3: 47914782-47916781 Medicago truncatula
Medtr3g103990 2.0kb downstream 2.0kb downstream 2630 true chr3: 47916782-47919411 Medicago truncatula
Medtr3g103990 2.0kb downstream 2.0kb downstream 2000 false chr3: 47917412-47919411 Medicago truncatula
Medtr3g103990 5.0kb upstream 5.0kb upstream 5630 true chr3: 47911782-47917411 Medicago truncatula
Medtr3g103990 5.0kb upstream 5.0kb upstream 5000 false chr3: 47911782-47916781 Medicago truncatula
Medtr3g103990 5.0kb downstream 5.0kb downstream 5630 true chr3: 47916782-47922411 Medicago truncatula
Medtr3g103990 5.0kb downstream 5.0kb downstream 5000 false chr3: 47917412-47922411 Medicago truncatula
Medtr3g103990 10.0kb upstream 10.0kb upstream 10630 true chr3: 47906782-47917411 Medicago truncatula
Medtr3g103990 10.0kb upstream 10.0kb upstream 10000 false chr3: 47906782-47916781 Medicago truncatula
Medtr3g103990 10.0kb downstream 10.0kb downstream 10630 true chr3: 47916782-47927411 Medicago truncatula
Medtr3g103990 10.0kb downstream 10.0kb downstream 10000 false chr3: 47917412-47927411 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121622559 5273 Angiosperm Singleton cluster - no MSA
122260194 5265 Fabidae Singleton cluster - no MSA
124001597 5270 Rosid Singleton cluster - no MSA
123575798 5271 Pentapetalae Singleton cluster - no MSA
122610512 5272 Eudicot Singleton cluster - no MSA
120894663 5274 Embryophyte Singleton cluster - no MSA
122935318 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.076       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain