Gene : Medtr3g105900 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02519//PF02990//PF13041 - Auxin responsive protein (Auxin_inducible) // Endomembrane protein 70 (EMP70) // PPR repeat family (PPR_2) Description:  proton gradient regulation protein
Genomic Order:  5852 Name:  ? Medtr3g105900
Secondary Identifier:  ? PAC:31053746
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g105900 0.5kb upstream 0.5kb upstream 6944 true chr3: 48840643-48847586 Medicago truncatula
Medtr3g105900 0.5kb upstream 0.5kb upstream 500 false chr3: 48847087-48847586 Medicago truncatula
Medtr3g105900 0.5kb downstream 0.5kb downstream 6944 true chr3: 48840143-48847086 Medicago truncatula
Medtr3g105900 0.5kb downstream 0.5kb downstream 500 false chr3: 48840143-48840642 Medicago truncatula
Medtr3g105900 1.0kb upstream 1.0kb upstream 7444 true chr3: 48840643-48848086 Medicago truncatula
Medtr3g105900 1.0kb upstream 1.0kb upstream 1000 false chr3: 48847087-48848086 Medicago truncatula
Medtr3g105900 1.0kb downstream 1.0kb downstream 7444 true chr3: 48839643-48847086 Medicago truncatula
Medtr3g105900 1.0kb downstream 1.0kb downstream 1000 false chr3: 48839643-48840642 Medicago truncatula
Medtr3g105900 2.0kb upstream 2.0kb upstream 8444 true chr3: 48840643-48849086 Medicago truncatula
Medtr3g105900 2.0kb upstream 2.0kb upstream 2000 false chr3: 48847087-48849086 Medicago truncatula
Medtr3g105900 2.0kb downstream 2.0kb downstream 8444 true chr3: 48838643-48847086 Medicago truncatula
Medtr3g105900 2.0kb downstream 2.0kb downstream 2000 false chr3: 48838643-48840642 Medicago truncatula
Medtr3g105900 5.0kb upstream 5.0kb upstream 11444 true chr3: 48840643-48852086 Medicago truncatula
Medtr3g105900 5.0kb upstream 5.0kb upstream 5000 false chr3: 48847087-48852086 Medicago truncatula
Medtr3g105900 5.0kb downstream 5.0kb downstream 11444 true chr3: 48835643-48847086 Medicago truncatula
Medtr3g105900 5.0kb downstream 5.0kb downstream 5000 false chr3: 48835643-48840642 Medicago truncatula
Medtr3g105900 10.0kb upstream 10.0kb upstream 16444 true chr3: 48840643-48857086 Medicago truncatula
Medtr3g105900 10.0kb upstream 10.0kb upstream 10000 false chr3: 48847087-48857086 Medicago truncatula
Medtr3g105900 10.0kb downstream 10.0kb downstream 16444 true chr3: 48830643-48847086 Medicago truncatula
Medtr3g105900 10.0kb downstream 10.0kb downstream 10000 false chr3: 48830643-48840642 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304756 5265 Fabidae View MSA
124068789 5270 Rosid View MSA
123737281 5271 Pentapetalae View MSA
122788345 5272 Eudicot View MSA
122045330 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.08        
cufflinks 2.375        
cufflinks 3.073       High
cufflinks 0.069        
cufflinks 5.036       High
cufflinks 0.076     Low  
cufflinks 0.067     Low  
cufflinks 2.737        
cufflinks 0.119        

0 Strain