Gene : Medtr4g030200 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12217 - LIGATIN Description:  eukaryotic translation initiation factor SUI1-like protein
Genomic Order:  1354 Name:  ? Medtr4g030200
Secondary Identifier:  ? PAC:31107229
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g030200 0.5kb upstream 0.5kb upstream 8954 true chr4: 10406681-10415634 Medicago truncatula
Medtr4g030200 0.5kb upstream 0.5kb upstream 500 false chr4: 10406681-10407180 Medicago truncatula
Medtr4g030200 0.5kb downstream 0.5kb downstream 8954 true chr4: 10407181-10416134 Medicago truncatula
Medtr4g030200 0.5kb downstream 0.5kb downstream 500 false chr4: 10415635-10416134 Medicago truncatula
Medtr4g030200 1.0kb upstream 1.0kb upstream 9454 true chr4: 10406181-10415634 Medicago truncatula
Medtr4g030200 1.0kb upstream 1.0kb upstream 1000 false chr4: 10406181-10407180 Medicago truncatula
Medtr4g030200 1.0kb downstream 1.0kb downstream 9454 true chr4: 10407181-10416634 Medicago truncatula
Medtr4g030200 1.0kb downstream 1.0kb downstream 1000 false chr4: 10415635-10416634 Medicago truncatula
Medtr4g030200 2.0kb upstream 2.0kb upstream 10454 true chr4: 10405181-10415634 Medicago truncatula
Medtr4g030200 2.0kb upstream 2.0kb upstream 2000 false chr4: 10405181-10407180 Medicago truncatula
Medtr4g030200 2.0kb downstream 2.0kb downstream 10454 true chr4: 10407181-10417634 Medicago truncatula
Medtr4g030200 2.0kb downstream 2.0kb downstream 2000 false chr4: 10415635-10417634 Medicago truncatula
Medtr4g030200 5.0kb upstream 5.0kb upstream 13454 true chr4: 10402181-10415634 Medicago truncatula
Medtr4g030200 5.0kb upstream 5.0kb upstream 5000 false chr4: 10402181-10407180 Medicago truncatula
Medtr4g030200 5.0kb downstream 5.0kb downstream 13454 true chr4: 10407181-10420634 Medicago truncatula
Medtr4g030200 5.0kb downstream 5.0kb downstream 5000 false chr4: 10415635-10420634 Medicago truncatula
Medtr4g030200 10.0kb upstream 10.0kb upstream 18454 true chr4: 10397181-10415634 Medicago truncatula
Medtr4g030200 10.0kb upstream 10.0kb upstream 10000 false chr4: 10397181-10407180 Medicago truncatula
Medtr4g030200 10.0kb downstream 10.0kb downstream 18454 true chr4: 10407181-10425634 Medicago truncatula
Medtr4g030200 10.0kb downstream 10.0kb downstream 10000 false chr4: 10415635-10425634 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041515 5273 Angiosperm View MSA
122305235 5265 Fabidae View MSA
124063862 5270 Rosid View MSA
123737904 5271 Pentapetalae View MSA
122786176 5272 Eudicot View MSA
121347053 5274 Embryophyte View MSA
123424674 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.055       High
cufflinks 1.202        
cufflinks 1.316        
cufflinks 0.35       Low
cufflinks 1.635        
cufflinks 0.645        
cufflinks 1.692        
cufflinks 1.003        
cufflinks 1.099        

0 Strain