Gene : Medtr4g009540 M. truncatula Mt4.0v1
Defline:  (1 of 27) PTHR23042//PTHR23042:SF57 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS Description:  helix loop helix DNA-binding domain protein
Genomic Order:  254 Name:  ? Medtr4g009540
Secondary Identifier:  ? PAC:31115391
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g009540 0.5kb upstream 0.5kb upstream 2208 true chr4: 1840252-1842459 Medicago truncatula
Medtr4g009540 0.5kb upstream 0.5kb upstream 500 false chr4: 1841960-1842459 Medicago truncatula
Medtr4g009540 0.5kb downstream 0.5kb downstream 2208 true chr4: 1839752-1841959 Medicago truncatula
Medtr4g009540 0.5kb downstream 0.5kb downstream 500 false chr4: 1839752-1840251 Medicago truncatula
Medtr4g009540 1.0kb upstream 1.0kb upstream 2708 true chr4: 1840252-1842959 Medicago truncatula
Medtr4g009540 1.0kb upstream 1.0kb upstream 1000 false chr4: 1841960-1842959 Medicago truncatula
Medtr4g009540 1.0kb downstream 1.0kb downstream 2708 true chr4: 1839252-1841959 Medicago truncatula
Medtr4g009540 1.0kb downstream 1.0kb downstream 1000 false chr4: 1839252-1840251 Medicago truncatula
Medtr4g009540 2.0kb upstream 2.0kb upstream 3708 true chr4: 1840252-1843959 Medicago truncatula
Medtr4g009540 2.0kb upstream 2.0kb upstream 2000 false chr4: 1841960-1843959 Medicago truncatula
Medtr4g009540 2.0kb downstream 2.0kb downstream 3708 true chr4: 1838252-1841959 Medicago truncatula
Medtr4g009540 2.0kb downstream 2.0kb downstream 2000 false chr4: 1838252-1840251 Medicago truncatula
Medtr4g009540 5.0kb upstream 5.0kb upstream 6708 true chr4: 1840252-1846959 Medicago truncatula
Medtr4g009540 5.0kb upstream 5.0kb upstream 5000 false chr4: 1841960-1846959 Medicago truncatula
Medtr4g009540 5.0kb downstream 5.0kb downstream 6708 true chr4: 1835252-1841959 Medicago truncatula
Medtr4g009540 5.0kb downstream 5.0kb downstream 5000 false chr4: 1835252-1840251 Medicago truncatula
Medtr4g009540 10.0kb upstream 10.0kb upstream 11708 true chr4: 1840252-1851959 Medicago truncatula
Medtr4g009540 10.0kb upstream 10.0kb upstream 10000 false chr4: 1841960-1851959 Medicago truncatula
Medtr4g009540 10.0kb downstream 10.0kb downstream 11708 true chr4: 1830252-1841959 Medicago truncatula
Medtr4g009540 10.0kb downstream 10.0kb downstream 10000 false chr4: 1830252-1840251 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297642 5265 Fabidae View MSA
124036098 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.044     Low Low
cufflinks 2.916       High
cufflinks 0.783        
cufflinks 0.008     Low Low
cufflinks 1.194        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.332        
cufflinks 0.496        
cufflinks 0.619        

0 Strain