Gene : Medtr4g022330 M. truncatula Mt4.0v1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Description:  phototropic-responsive NPH3 family protein
Genomic Order:  969 Name:  ? Medtr4g022330
Secondary Identifier:  ? PAC:31107964
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g022330 0.5kb upstream 0.5kb upstream 4044 true chr4: 7373551-7377594 Medicago truncatula
Medtr4g022330 0.5kb upstream 0.5kb upstream 500 false chr4: 7377095-7377594 Medicago truncatula
Medtr4g022330 0.5kb downstream 0.5kb downstream 4044 true chr4: 7373051-7377094 Medicago truncatula
Medtr4g022330 0.5kb downstream 0.5kb downstream 500 false chr4: 7373051-7373550 Medicago truncatula
Medtr4g022330 1.0kb upstream 1.0kb upstream 4544 true chr4: 7373551-7378094 Medicago truncatula
Medtr4g022330 1.0kb upstream 1.0kb upstream 1000 false chr4: 7377095-7378094 Medicago truncatula
Medtr4g022330 1.0kb downstream 1.0kb downstream 4544 true chr4: 7372551-7377094 Medicago truncatula
Medtr4g022330 1.0kb downstream 1.0kb downstream 1000 false chr4: 7372551-7373550 Medicago truncatula
Medtr4g022330 2.0kb upstream 2.0kb upstream 5544 true chr4: 7373551-7379094 Medicago truncatula
Medtr4g022330 2.0kb upstream 2.0kb upstream 2000 false chr4: 7377095-7379094 Medicago truncatula
Medtr4g022330 2.0kb downstream 2.0kb downstream 5544 true chr4: 7371551-7377094 Medicago truncatula
Medtr4g022330 2.0kb downstream 2.0kb downstream 2000 false chr4: 7371551-7373550 Medicago truncatula
Medtr4g022330 5.0kb upstream 5.0kb upstream 8544 true chr4: 7373551-7382094 Medicago truncatula
Medtr4g022330 5.0kb upstream 5.0kb upstream 5000 false chr4: 7377095-7382094 Medicago truncatula
Medtr4g022330 5.0kb downstream 5.0kb downstream 8544 true chr4: 7368551-7377094 Medicago truncatula
Medtr4g022330 5.0kb downstream 5.0kb downstream 5000 false chr4: 7368551-7373550 Medicago truncatula
Medtr4g022330 10.0kb upstream 10.0kb upstream 13544 true chr4: 7373551-7387094 Medicago truncatula
Medtr4g022330 10.0kb upstream 10.0kb upstream 10000 false chr4: 7377095-7387094 Medicago truncatula
Medtr4g022330 10.0kb downstream 10.0kb downstream 13544 true chr4: 7363551-7377094 Medicago truncatula
Medtr4g022330 10.0kb downstream 10.0kb downstream 10000 false chr4: 7363551-7373550 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301310 5265 Fabidae View MSA
124065834 5270 Rosid View MSA
123743822 5271 Pentapetalae View MSA
122789563 5272 Eudicot View MSA
122044004 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.192       Low
cufflinks 1.539        
cufflinks 2.076       High
cufflinks 1.014        
cufflinks 2.307       High
cufflinks 0.155       Low
cufflinks 0.558        
cufflinks 1.144        
cufflinks 0.698        

0 Strain