Gene : Medtr4g070380 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10920:SF13 - PRE-RRNA PROCESSING PROTEIN FTSJ3 Description:  adoMet-dependent rRNA methyltransferase Spb1
Genomic Order:  3218 Name:  ? Medtr4g070380
Secondary Identifier:  ? PAC:31106416
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g070380 0.5kb upstream 0.5kb upstream 5525 true chr4: 26516055-26521579 Medicago truncatula
Medtr4g070380 0.5kb upstream 0.5kb upstream 500 false chr4: 26521080-26521579 Medicago truncatula
Medtr4g070380 0.5kb downstream 0.5kb downstream 5525 true chr4: 26515555-26521079 Medicago truncatula
Medtr4g070380 0.5kb downstream 0.5kb downstream 500 false chr4: 26515555-26516054 Medicago truncatula
Medtr4g070380 1.0kb upstream 1.0kb upstream 6025 true chr4: 26516055-26522079 Medicago truncatula
Medtr4g070380 1.0kb upstream 1.0kb upstream 1000 false chr4: 26521080-26522079 Medicago truncatula
Medtr4g070380 1.0kb downstream 1.0kb downstream 6025 true chr4: 26515055-26521079 Medicago truncatula
Medtr4g070380 1.0kb downstream 1.0kb downstream 1000 false chr4: 26515055-26516054 Medicago truncatula
Medtr4g070380 2.0kb upstream 2.0kb upstream 7025 true chr4: 26516055-26523079 Medicago truncatula
Medtr4g070380 2.0kb upstream 2.0kb upstream 2000 false chr4: 26521080-26523079 Medicago truncatula
Medtr4g070380 2.0kb downstream 2.0kb downstream 7025 true chr4: 26514055-26521079 Medicago truncatula
Medtr4g070380 2.0kb downstream 2.0kb downstream 2000 false chr4: 26514055-26516054 Medicago truncatula
Medtr4g070380 5.0kb upstream 5.0kb upstream 10025 true chr4: 26516055-26526079 Medicago truncatula
Medtr4g070380 5.0kb upstream 5.0kb upstream 5000 false chr4: 26521080-26526079 Medicago truncatula
Medtr4g070380 5.0kb downstream 5.0kb downstream 10025 true chr4: 26511055-26521079 Medicago truncatula
Medtr4g070380 5.0kb downstream 5.0kb downstream 5000 false chr4: 26511055-26516054 Medicago truncatula
Medtr4g070380 10.0kb upstream 10.0kb upstream 15025 true chr4: 26516055-26531079 Medicago truncatula
Medtr4g070380 10.0kb upstream 10.0kb upstream 10000 false chr4: 26521080-26531079 Medicago truncatula
Medtr4g070380 10.0kb downstream 10.0kb downstream 15025 true chr4: 26506055-26521079 Medicago truncatula
Medtr4g070380 10.0kb downstream 10.0kb downstream 10000 false chr4: 26506055-26516054 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303190 5265 Fabidae View MSA
124066192 5270 Rosid View MSA
123747132 5271 Pentapetalae View MSA
122787166 5272 Eudicot View MSA
122043455 5273 Angiosperm View MSA
121347110 5274 Embryophyte View MSA
123425494 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.073        
cufflinks 0.161        
cufflinks 0.178        
cufflinks 0.028     Low  
cufflinks 0.507       High
cufflinks 0.044     Low  
cufflinks 0.023     Low Low
cufflinks 0.568       High
cufflinks 0.032     Low  

0 Strain