Gene : Medtr4g050850 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02419 - PsbL protein (PsbL) Description:  cytochrome b559 subunit alpha
Genomic Order:  2106 Name:  ? Medtr4g050850
Secondary Identifier:  ? PAC:31115005
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g050850 0.5kb upstream 0.5kb upstream 2187 true chr4: 18054140-18056326 Medicago truncatula
Medtr4g050850 0.5kb upstream 0.5kb upstream 500 false chr4: 18054140-18054639 Medicago truncatula
Medtr4g050850 0.5kb downstream 0.5kb downstream 2187 true chr4: 18054640-18056826 Medicago truncatula
Medtr4g050850 0.5kb downstream 0.5kb downstream 500 false chr4: 18056327-18056826 Medicago truncatula
Medtr4g050850 1.0kb upstream 1.0kb upstream 2687 true chr4: 18053640-18056326 Medicago truncatula
Medtr4g050850 1.0kb upstream 1.0kb upstream 1000 false chr4: 18053640-18054639 Medicago truncatula
Medtr4g050850 1.0kb downstream 1.0kb downstream 2687 true chr4: 18054640-18057326 Medicago truncatula
Medtr4g050850 1.0kb downstream 1.0kb downstream 1000 false chr4: 18056327-18057326 Medicago truncatula
Medtr4g050850 2.0kb upstream 2.0kb upstream 3687 true chr4: 18052640-18056326 Medicago truncatula
Medtr4g050850 2.0kb upstream 2.0kb upstream 2000 false chr4: 18052640-18054639 Medicago truncatula
Medtr4g050850 2.0kb downstream 2.0kb downstream 3687 true chr4: 18054640-18058326 Medicago truncatula
Medtr4g050850 2.0kb downstream 2.0kb downstream 2000 false chr4: 18056327-18058326 Medicago truncatula
Medtr4g050850 5.0kb upstream 5.0kb upstream 6687 true chr4: 18049640-18056326 Medicago truncatula
Medtr4g050850 5.0kb upstream 5.0kb upstream 5000 false chr4: 18049640-18054639 Medicago truncatula
Medtr4g050850 5.0kb downstream 5.0kb downstream 6687 true chr4: 18054640-18061326 Medicago truncatula
Medtr4g050850 5.0kb downstream 5.0kb downstream 5000 false chr4: 18056327-18061326 Medicago truncatula
Medtr4g050850 10.0kb upstream 10.0kb upstream 11687 true chr4: 18044640-18056326 Medicago truncatula
Medtr4g050850 10.0kb upstream 10.0kb upstream 10000 false chr4: 18044640-18054639 Medicago truncatula
Medtr4g050850 10.0kb downstream 10.0kb downstream 11687 true chr4: 18054640-18066326 Medicago truncatula
Medtr4g050850 10.0kb downstream 10.0kb downstream 10000 false chr4: 18056327-18066326 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027002 5273 Angiosperm View MSA
122298306 5265 Fabidae View MSA
124050140 5270 Rosid View MSA
123750907 5271 Pentapetalae View MSA
122797055 5272 Eudicot View MSA
121296728 5274 Embryophyte View MSA
123424436 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.081        
cufflinks 3.027        
cufflinks 3.296       High
cufflinks 0.013     Low Low
cufflinks 2.868        
cufflinks 0.348        
cufflinks 0.079        
cufflinks 2.99        
cufflinks 0.036     Low Low

0 Strain