Gene : Medtr4g051515 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Description:  E3 ubiquitin-protein ligase PUB23-like protein
Genomic Order:  2169 Name:  ? Medtr4g051515
Secondary Identifier:  ? PAC:31113441
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g051515 0.5kb upstream 0.5kb upstream 2029 true chr4: 18426005-18428033 Medicago truncatula
Medtr4g051515 0.5kb upstream 0.5kb upstream 500 false chr4: 18427534-18428033 Medicago truncatula
Medtr4g051515 0.5kb downstream 0.5kb downstream 2029 true chr4: 18425505-18427533 Medicago truncatula
Medtr4g051515 0.5kb downstream 0.5kb downstream 500 false chr4: 18425505-18426004 Medicago truncatula
Medtr4g051515 1.0kb upstream 1.0kb upstream 2529 true chr4: 18426005-18428533 Medicago truncatula
Medtr4g051515 1.0kb upstream 1.0kb upstream 1000 false chr4: 18427534-18428533 Medicago truncatula
Medtr4g051515 1.0kb downstream 1.0kb downstream 2529 true chr4: 18425005-18427533 Medicago truncatula
Medtr4g051515 1.0kb downstream 1.0kb downstream 1000 false chr4: 18425005-18426004 Medicago truncatula
Medtr4g051515 2.0kb upstream 2.0kb upstream 3529 true chr4: 18426005-18429533 Medicago truncatula
Medtr4g051515 2.0kb upstream 2.0kb upstream 2000 false chr4: 18427534-18429533 Medicago truncatula
Medtr4g051515 2.0kb downstream 2.0kb downstream 3529 true chr4: 18424005-18427533 Medicago truncatula
Medtr4g051515 2.0kb downstream 2.0kb downstream 2000 false chr4: 18424005-18426004 Medicago truncatula
Medtr4g051515 5.0kb upstream 5.0kb upstream 6529 true chr4: 18426005-18432533 Medicago truncatula
Medtr4g051515 5.0kb upstream 5.0kb upstream 5000 false chr4: 18427534-18432533 Medicago truncatula
Medtr4g051515 5.0kb downstream 5.0kb downstream 6529 true chr4: 18421005-18427533 Medicago truncatula
Medtr4g051515 5.0kb downstream 5.0kb downstream 5000 false chr4: 18421005-18426004 Medicago truncatula
Medtr4g051515 10.0kb upstream 10.0kb upstream 11529 true chr4: 18426005-18437533 Medicago truncatula
Medtr4g051515 10.0kb upstream 10.0kb upstream 10000 false chr4: 18427534-18437533 Medicago truncatula
Medtr4g051515 10.0kb downstream 10.0kb downstream 11529 true chr4: 18416005-18427533 Medicago truncatula
Medtr4g051515 10.0kb downstream 10.0kb downstream 10000 false chr4: 18416005-18426004 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.783     High High
cufflinks 0.24       Low
cufflinks 0.645        
cufflinks 7.649        
cufflinks 0.444        
cufflinks 19.419     High High
cufflinks 17.057     High High
cufflinks 0.483        
cufflinks 1.883        

0 Strain