Gene : Medtr4g051270 M. truncatula Mt4.0v1
Defline:  (1 of 8) PTHR23321//PTHR23321:SF33 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR Description:  ribulose bisphosphate carboxylase large chain domain protein
Genomic Order:  2142 Name:  ? Medtr4g051270
Secondary Identifier:  ? PAC:31111110
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CALVIN-PWY Medicago truncatula pathologic  
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5723 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g051270 0.5kb upstream 0.5kb upstream 2148 true chr4: 18298576-18300723 Medicago truncatula
Medtr4g051270 0.5kb upstream 0.5kb upstream 500 false chr4: 18298576-18299075 Medicago truncatula
Medtr4g051270 0.5kb downstream 0.5kb downstream 2148 true chr4: 18299076-18301223 Medicago truncatula
Medtr4g051270 0.5kb downstream 0.5kb downstream 500 false chr4: 18300724-18301223 Medicago truncatula
Medtr4g051270 1.0kb upstream 1.0kb upstream 2648 true chr4: 18298076-18300723 Medicago truncatula
Medtr4g051270 1.0kb upstream 1.0kb upstream 1000 false chr4: 18298076-18299075 Medicago truncatula
Medtr4g051270 1.0kb downstream 1.0kb downstream 2648 true chr4: 18299076-18301723 Medicago truncatula
Medtr4g051270 1.0kb downstream 1.0kb downstream 1000 false chr4: 18300724-18301723 Medicago truncatula
Medtr4g051270 2.0kb upstream 2.0kb upstream 3648 true chr4: 18297076-18300723 Medicago truncatula
Medtr4g051270 2.0kb upstream 2.0kb upstream 2000 false chr4: 18297076-18299075 Medicago truncatula
Medtr4g051270 2.0kb downstream 2.0kb downstream 3648 true chr4: 18299076-18302723 Medicago truncatula
Medtr4g051270 2.0kb downstream 2.0kb downstream 2000 false chr4: 18300724-18302723 Medicago truncatula
Medtr4g051270 5.0kb upstream 5.0kb upstream 6648 true chr4: 18294076-18300723 Medicago truncatula
Medtr4g051270 5.0kb upstream 5.0kb upstream 5000 false chr4: 18294076-18299075 Medicago truncatula
Medtr4g051270 5.0kb downstream 5.0kb downstream 6648 true chr4: 18299076-18305723 Medicago truncatula
Medtr4g051270 5.0kb downstream 5.0kb downstream 5000 false chr4: 18300724-18305723 Medicago truncatula
Medtr4g051270 10.0kb upstream 10.0kb upstream 11648 true chr4: 18289076-18300723 Medicago truncatula
Medtr4g051270 10.0kb upstream 10.0kb upstream 10000 false chr4: 18289076-18299075 Medicago truncatula
Medtr4g051270 10.0kb downstream 10.0kb downstream 11648 true chr4: 18299076-18310723 Medicago truncatula
Medtr4g051270 10.0kb downstream 10.0kb downstream 10000 false chr4: 18300724-18310723 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122262197 5265 Fabidae Singleton cluster - no MSA
124050800 5270 Rosid View MSA
123751247 5271 Pentapetalae View MSA
122773961 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 0.077     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.092        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.119        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain