Gene : Medtr4g052940 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0110//KOG0131//KOG0148 - RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Description:  RNA recognition motif, a.k.a. RRM, RBD protein
Genomic Order:  2272 Name:  ? Medtr4g052940
Secondary Identifier:  ? PAC:31112802
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g052940 0.5kb upstream 0.5kb upstream 5590 true chr4: 19205091-19210680 Medicago truncatula
Medtr4g052940 0.5kb upstream 0.5kb upstream 500 false chr4: 19205091-19205590 Medicago truncatula
Medtr4g052940 0.5kb downstream 0.5kb downstream 5590 true chr4: 19205591-19211180 Medicago truncatula
Medtr4g052940 0.5kb downstream 0.5kb downstream 500 false chr4: 19210681-19211180 Medicago truncatula
Medtr4g052940 1.0kb upstream 1.0kb upstream 6090 true chr4: 19204591-19210680 Medicago truncatula
Medtr4g052940 1.0kb upstream 1.0kb upstream 1000 false chr4: 19204591-19205590 Medicago truncatula
Medtr4g052940 1.0kb downstream 1.0kb downstream 6090 true chr4: 19205591-19211680 Medicago truncatula
Medtr4g052940 1.0kb downstream 1.0kb downstream 1000 false chr4: 19210681-19211680 Medicago truncatula
Medtr4g052940 2.0kb upstream 2.0kb upstream 7090 true chr4: 19203591-19210680 Medicago truncatula
Medtr4g052940 2.0kb upstream 2.0kb upstream 2000 false chr4: 19203591-19205590 Medicago truncatula
Medtr4g052940 2.0kb downstream 2.0kb downstream 7090 true chr4: 19205591-19212680 Medicago truncatula
Medtr4g052940 2.0kb downstream 2.0kb downstream 2000 false chr4: 19210681-19212680 Medicago truncatula
Medtr4g052940 5.0kb upstream 5.0kb upstream 10090 true chr4: 19200591-19210680 Medicago truncatula
Medtr4g052940 5.0kb upstream 5.0kb upstream 5000 false chr4: 19200591-19205590 Medicago truncatula
Medtr4g052940 5.0kb downstream 5.0kb downstream 10090 true chr4: 19205591-19215680 Medicago truncatula
Medtr4g052940 5.0kb downstream 5.0kb downstream 5000 false chr4: 19210681-19215680 Medicago truncatula
Medtr4g052940 10.0kb upstream 10.0kb upstream 15090 true chr4: 19195591-19210680 Medicago truncatula
Medtr4g052940 10.0kb upstream 10.0kb upstream 10000 false chr4: 19195591-19205590 Medicago truncatula
Medtr4g052940 10.0kb downstream 10.0kb downstream 15090 true chr4: 19205591-19220680 Medicago truncatula
Medtr4g052940 10.0kb downstream 10.0kb downstream 10000 false chr4: 19210681-19220680 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305627 5265 Fabidae View MSA
124067742 5270 Rosid View MSA
123740727 5271 Pentapetalae View MSA
122786364 5272 Eudicot View MSA
122049211 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121344255 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.978        
cufflinks 2.281        
cufflinks 2.674        
cufflinks 1.073       Low
cufflinks 2.586        
cufflinks 0.732       Low
cufflinks 2.068        
cufflinks 2.21        
cufflinks 1.471        

0 Strain