Gene : Medtr4g055310 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR21022//PTHR21022:SF5 - PREPHENATE DEHYDRATASE P PROTEIN Description:  arogenate/prephenate dehydratase
Genomic Order:  2384 Name:  ? Medtr4g055310
Secondary Identifier:  ? PAC:31114213
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3462 Medicago truncatula pathologic  
Mtruncatula PWY-3481 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g055310 0.5kb upstream 0.5kb upstream 2569 true chr4: 20136133-20138701 Medicago truncatula
Medtr4g055310 0.5kb upstream 0.5kb upstream 500 false chr4: 20136133-20136632 Medicago truncatula
Medtr4g055310 0.5kb downstream 0.5kb downstream 2569 true chr4: 20136633-20139201 Medicago truncatula
Medtr4g055310 0.5kb downstream 0.5kb downstream 500 false chr4: 20138702-20139201 Medicago truncatula
Medtr4g055310 1.0kb upstream 1.0kb upstream 3069 true chr4: 20135633-20138701 Medicago truncatula
Medtr4g055310 1.0kb upstream 1.0kb upstream 1000 false chr4: 20135633-20136632 Medicago truncatula
Medtr4g055310 1.0kb downstream 1.0kb downstream 3069 true chr4: 20136633-20139701 Medicago truncatula
Medtr4g055310 1.0kb downstream 1.0kb downstream 1000 false chr4: 20138702-20139701 Medicago truncatula
Medtr4g055310 2.0kb upstream 2.0kb upstream 4069 true chr4: 20134633-20138701 Medicago truncatula
Medtr4g055310 2.0kb upstream 2.0kb upstream 2000 false chr4: 20134633-20136632 Medicago truncatula
Medtr4g055310 2.0kb downstream 2.0kb downstream 4069 true chr4: 20136633-20140701 Medicago truncatula
Medtr4g055310 2.0kb downstream 2.0kb downstream 2000 false chr4: 20138702-20140701 Medicago truncatula
Medtr4g055310 5.0kb upstream 5.0kb upstream 7069 true chr4: 20131633-20138701 Medicago truncatula
Medtr4g055310 5.0kb upstream 5.0kb upstream 5000 false chr4: 20131633-20136632 Medicago truncatula
Medtr4g055310 5.0kb downstream 5.0kb downstream 7069 true chr4: 20136633-20143701 Medicago truncatula
Medtr4g055310 5.0kb downstream 5.0kb downstream 5000 false chr4: 20138702-20143701 Medicago truncatula
Medtr4g055310 10.0kb upstream 10.0kb upstream 12069 true chr4: 20126633-20138701 Medicago truncatula
Medtr4g055310 10.0kb upstream 10.0kb upstream 10000 false chr4: 20126633-20136632 Medicago truncatula
Medtr4g055310 10.0kb downstream 10.0kb downstream 12069 true chr4: 20136633-20148701 Medicago truncatula
Medtr4g055310 10.0kb downstream 10.0kb downstream 10000 false chr4: 20138702-20148701 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298172 5265 Fabidae View MSA
124066223 5270 Rosid View MSA
123745222 5271 Pentapetalae View MSA
122787752 5272 Eudicot View MSA
122046279 5273 Angiosperm View MSA
121351398 5274 Embryophyte View MSA
123427097 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.778        
cufflinks 0.983        
cufflinks 0.722       Low
cufflinks 76.927     High High
cufflinks 1.729        
cufflinks 47.589     High High
cufflinks 23.159     High  
cufflinks 0.748       Low
cufflinks 30.651     High  

0 Strain