Gene : Medtr4g057240 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10003:SF34 - SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Description:  superoxide dismutase [Cu-Zn] protein
Genomic Order:  2473 Name:  ? Medtr4g057240
Secondary Identifier:  ? PAC:31113910
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula DETOX1-PWY Medicago truncatula pathologic  
Mtruncatula DETOX1-PWY-1 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g057240 0.5kb upstream 0.5kb upstream 4261 true chr4: 20933134-20937394 Medicago truncatula
Medtr4g057240 0.5kb upstream 0.5kb upstream 500 false chr4: 20936895-20937394 Medicago truncatula
Medtr4g057240 0.5kb downstream 0.5kb downstream 4261 true chr4: 20932634-20936894 Medicago truncatula
Medtr4g057240 0.5kb downstream 0.5kb downstream 500 false chr4: 20932634-20933133 Medicago truncatula
Medtr4g057240 1.0kb upstream 1.0kb upstream 4761 true chr4: 20933134-20937894 Medicago truncatula
Medtr4g057240 1.0kb upstream 1.0kb upstream 1000 false chr4: 20936895-20937894 Medicago truncatula
Medtr4g057240 1.0kb downstream 1.0kb downstream 4761 true chr4: 20932134-20936894 Medicago truncatula
Medtr4g057240 1.0kb downstream 1.0kb downstream 1000 false chr4: 20932134-20933133 Medicago truncatula
Medtr4g057240 2.0kb upstream 2.0kb upstream 5761 true chr4: 20933134-20938894 Medicago truncatula
Medtr4g057240 2.0kb upstream 2.0kb upstream 2000 false chr4: 20936895-20938894 Medicago truncatula
Medtr4g057240 2.0kb downstream 2.0kb downstream 5761 true chr4: 20931134-20936894 Medicago truncatula
Medtr4g057240 2.0kb downstream 2.0kb downstream 2000 false chr4: 20931134-20933133 Medicago truncatula
Medtr4g057240 5.0kb upstream 5.0kb upstream 8761 true chr4: 20933134-20941894 Medicago truncatula
Medtr4g057240 5.0kb upstream 5.0kb upstream 5000 false chr4: 20936895-20941894 Medicago truncatula
Medtr4g057240 5.0kb downstream 5.0kb downstream 8761 true chr4: 20928134-20936894 Medicago truncatula
Medtr4g057240 5.0kb downstream 5.0kb downstream 5000 false chr4: 20928134-20933133 Medicago truncatula
Medtr4g057240 10.0kb upstream 10.0kb upstream 13761 true chr4: 20933134-20946894 Medicago truncatula
Medtr4g057240 10.0kb upstream 10.0kb upstream 10000 false chr4: 20936895-20946894 Medicago truncatula
Medtr4g057240 10.0kb downstream 10.0kb downstream 13761 true chr4: 20923134-20936894 Medicago truncatula
Medtr4g057240 10.0kb downstream 10.0kb downstream 10000 false chr4: 20923134-20933133 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299889 5265 Fabidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.517       Low
cufflinks 74.375     High High
cufflinks 58.253     High  
cufflinks 12.505     High  
cufflinks 72.941     High High
cufflinks 7.366        
cufflinks 6.186       Low
cufflinks 95.894     High High
cufflinks 14.665     High  

0 Strain