Gene : Medtr4g057345 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR10459:SF10 - DNA LIGASE 1 Description:  DNA ligase I, ATP-dependent protein
Genomic Order:  2485 Name:  ? Medtr4g057345
Secondary Identifier:  ? PAC:31108994
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g057345 0.5kb upstream 0.5kb upstream 8210 true chr4: 20997507-21005716 Medicago truncatula
Medtr4g057345 0.5kb upstream 0.5kb upstream 500 false chr4: 20997507-20998006 Medicago truncatula
Medtr4g057345 0.5kb downstream 0.5kb downstream 8210 true chr4: 20998007-21006216 Medicago truncatula
Medtr4g057345 0.5kb downstream 0.5kb downstream 500 false chr4: 21005717-21006216 Medicago truncatula
Medtr4g057345 1.0kb upstream 1.0kb upstream 8710 true chr4: 20997007-21005716 Medicago truncatula
Medtr4g057345 1.0kb upstream 1.0kb upstream 1000 false chr4: 20997007-20998006 Medicago truncatula
Medtr4g057345 1.0kb downstream 1.0kb downstream 8710 true chr4: 20998007-21006716 Medicago truncatula
Medtr4g057345 1.0kb downstream 1.0kb downstream 1000 false chr4: 21005717-21006716 Medicago truncatula
Medtr4g057345 2.0kb upstream 2.0kb upstream 9710 true chr4: 20996007-21005716 Medicago truncatula
Medtr4g057345 2.0kb upstream 2.0kb upstream 2000 false chr4: 20996007-20998006 Medicago truncatula
Medtr4g057345 2.0kb downstream 2.0kb downstream 9710 true chr4: 20998007-21007716 Medicago truncatula
Medtr4g057345 2.0kb downstream 2.0kb downstream 2000 false chr4: 21005717-21007716 Medicago truncatula
Medtr4g057345 5.0kb upstream 5.0kb upstream 12710 true chr4: 20993007-21005716 Medicago truncatula
Medtr4g057345 5.0kb upstream 5.0kb upstream 5000 false chr4: 20993007-20998006 Medicago truncatula
Medtr4g057345 5.0kb downstream 5.0kb downstream 12710 true chr4: 20998007-21010716 Medicago truncatula
Medtr4g057345 5.0kb downstream 5.0kb downstream 5000 false chr4: 21005717-21010716 Medicago truncatula
Medtr4g057345 10.0kb upstream 10.0kb upstream 17710 true chr4: 20988007-21005716 Medicago truncatula
Medtr4g057345 10.0kb upstream 10.0kb upstream 10000 false chr4: 20988007-20998006 Medicago truncatula
Medtr4g057345 10.0kb downstream 10.0kb downstream 17710 true chr4: 20998007-21015716 Medicago truncatula
Medtr4g057345 10.0kb downstream 10.0kb downstream 10000 false chr4: 21005717-21015716 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305144 5265 Fabidae View MSA
124060401 5270 Rosid View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.408        
cufflinks 1.236        
cufflinks 1.011        
cufflinks 0.359       Low
cufflinks 1.692       High
cufflinks 0.413       Low
cufflinks 0.935        
cufflinks 0.854        
cufflinks 1.268        

0 Strain