Gene : Medtr4g094658 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  4919 Name:  ? Medtr4g094658
Secondary Identifier:  ? PAC:31110641
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g094658 0.5kb upstream 0.5kb upstream 3169 true chr4: 38660628-38663796 Medicago truncatula
Medtr4g094658 0.5kb upstream 0.5kb upstream 500 false chr4: 38663297-38663796 Medicago truncatula
Medtr4g094658 0.5kb downstream 0.5kb downstream 3169 true chr4: 38660128-38663296 Medicago truncatula
Medtr4g094658 0.5kb downstream 0.5kb downstream 500 false chr4: 38660128-38660627 Medicago truncatula
Medtr4g094658 1.0kb upstream 1.0kb upstream 3669 true chr4: 38660628-38664296 Medicago truncatula
Medtr4g094658 1.0kb upstream 1.0kb upstream 1000 false chr4: 38663297-38664296 Medicago truncatula
Medtr4g094658 1.0kb downstream 1.0kb downstream 3669 true chr4: 38659628-38663296 Medicago truncatula
Medtr4g094658 1.0kb downstream 1.0kb downstream 1000 false chr4: 38659628-38660627 Medicago truncatula
Medtr4g094658 2.0kb upstream 2.0kb upstream 4669 true chr4: 38660628-38665296 Medicago truncatula
Medtr4g094658 2.0kb upstream 2.0kb upstream 2000 false chr4: 38663297-38665296 Medicago truncatula
Medtr4g094658 2.0kb downstream 2.0kb downstream 4669 true chr4: 38658628-38663296 Medicago truncatula
Medtr4g094658 2.0kb downstream 2.0kb downstream 2000 false chr4: 38658628-38660627 Medicago truncatula
Medtr4g094658 5.0kb upstream 5.0kb upstream 7669 true chr4: 38660628-38668296 Medicago truncatula
Medtr4g094658 5.0kb upstream 5.0kb upstream 5000 false chr4: 38663297-38668296 Medicago truncatula
Medtr4g094658 5.0kb downstream 5.0kb downstream 7669 true chr4: 38655628-38663296 Medicago truncatula
Medtr4g094658 5.0kb downstream 5.0kb downstream 5000 false chr4: 38655628-38660627 Medicago truncatula
Medtr4g094658 10.0kb upstream 10.0kb upstream 12669 true chr4: 38660628-38673296 Medicago truncatula
Medtr4g094658 10.0kb upstream 10.0kb upstream 10000 false chr4: 38663297-38673296 Medicago truncatula
Medtr4g094658 10.0kb downstream 10.0kb downstream 12669 true chr4: 38650628-38663296 Medicago truncatula
Medtr4g094658 10.0kb downstream 10.0kb downstream 10000 false chr4: 38650628-38660627 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122302266 5265 Fabidae View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.31       High
cufflinks 0.095        
cufflinks 0.13        
cufflinks 0.062     Low Low
cufflinks 0.249        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.202        
cufflinks 0.164        
cufflinks 0.041     Low Low

0 Strain