Gene : Medtr4g094645 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  4917 Name:  ? Medtr4g094645
Secondary Identifier:  ? PAC:31109605
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g094645 0.5kb upstream 0.5kb upstream 3532 true chr4: 38632937-38636468 Medicago truncatula
Medtr4g094645 0.5kb upstream 0.5kb upstream 500 false chr4: 38635969-38636468 Medicago truncatula
Medtr4g094645 0.5kb downstream 0.5kb downstream 3532 true chr4: 38632437-38635968 Medicago truncatula
Medtr4g094645 0.5kb downstream 0.5kb downstream 500 false chr4: 38632437-38632936 Medicago truncatula
Medtr4g094645 1.0kb upstream 1.0kb upstream 4032 true chr4: 38632937-38636968 Medicago truncatula
Medtr4g094645 1.0kb upstream 1.0kb upstream 1000 false chr4: 38635969-38636968 Medicago truncatula
Medtr4g094645 1.0kb downstream 1.0kb downstream 4032 true chr4: 38631937-38635968 Medicago truncatula
Medtr4g094645 1.0kb downstream 1.0kb downstream 1000 false chr4: 38631937-38632936 Medicago truncatula
Medtr4g094645 2.0kb upstream 2.0kb upstream 5032 true chr4: 38632937-38637968 Medicago truncatula
Medtr4g094645 2.0kb upstream 2.0kb upstream 2000 false chr4: 38635969-38637968 Medicago truncatula
Medtr4g094645 2.0kb downstream 2.0kb downstream 5032 true chr4: 38630937-38635968 Medicago truncatula
Medtr4g094645 2.0kb downstream 2.0kb downstream 2000 false chr4: 38630937-38632936 Medicago truncatula
Medtr4g094645 5.0kb upstream 5.0kb upstream 8032 true chr4: 38632937-38640968 Medicago truncatula
Medtr4g094645 5.0kb upstream 5.0kb upstream 5000 false chr4: 38635969-38640968 Medicago truncatula
Medtr4g094645 5.0kb downstream 5.0kb downstream 8032 true chr4: 38627937-38635968 Medicago truncatula
Medtr4g094645 5.0kb downstream 5.0kb downstream 5000 false chr4: 38627937-38632936 Medicago truncatula
Medtr4g094645 10.0kb upstream 10.0kb upstream 13032 true chr4: 38632937-38645968 Medicago truncatula
Medtr4g094645 10.0kb upstream 10.0kb upstream 10000 false chr4: 38635969-38645968 Medicago truncatula
Medtr4g094645 10.0kb downstream 10.0kb downstream 13032 true chr4: 38622937-38635968 Medicago truncatula
Medtr4g094645 10.0kb downstream 10.0kb downstream 10000 false chr4: 38622937-38632936 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122302266 5265 Fabidae View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.301        
cufflinks 0.1        
cufflinks 0.261        
cufflinks 0.038     Low Low
cufflinks 0.482       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.358        
cufflinks 0.214        
cufflinks 0.148        

0 Strain