Gene : Medtr4g084800 M. truncatula Mt4.0v1
Defline:  (1 of 26) PF08659 - KR domain (KR) Description:  short-chain dehydrogenase/reductase
Genomic Order:  4163 Name:  ? Medtr4g084800
Secondary Identifier:  ? PAC:31113617
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5466 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g084800 0.5kb upstream 0.5kb upstream 1974 true chr4: 33052178-33054151 Medicago truncatula
Medtr4g084800 0.5kb upstream 0.5kb upstream 500 false chr4: 33052178-33052677 Medicago truncatula
Medtr4g084800 0.5kb downstream 0.5kb downstream 1974 true chr4: 33052678-33054651 Medicago truncatula
Medtr4g084800 0.5kb downstream 0.5kb downstream 500 false chr4: 33054152-33054651 Medicago truncatula
Medtr4g084800 1.0kb upstream 1.0kb upstream 2474 true chr4: 33051678-33054151 Medicago truncatula
Medtr4g084800 1.0kb upstream 1.0kb upstream 1000 false chr4: 33051678-33052677 Medicago truncatula
Medtr4g084800 1.0kb downstream 1.0kb downstream 2474 true chr4: 33052678-33055151 Medicago truncatula
Medtr4g084800 1.0kb downstream 1.0kb downstream 1000 false chr4: 33054152-33055151 Medicago truncatula
Medtr4g084800 2.0kb upstream 2.0kb upstream 3474 true chr4: 33050678-33054151 Medicago truncatula
Medtr4g084800 2.0kb upstream 2.0kb upstream 2000 false chr4: 33050678-33052677 Medicago truncatula
Medtr4g084800 2.0kb downstream 2.0kb downstream 3474 true chr4: 33052678-33056151 Medicago truncatula
Medtr4g084800 2.0kb downstream 2.0kb downstream 2000 false chr4: 33054152-33056151 Medicago truncatula
Medtr4g084800 5.0kb upstream 5.0kb upstream 6474 true chr4: 33047678-33054151 Medicago truncatula
Medtr4g084800 5.0kb upstream 5.0kb upstream 5000 false chr4: 33047678-33052677 Medicago truncatula
Medtr4g084800 5.0kb downstream 5.0kb downstream 6474 true chr4: 33052678-33059151 Medicago truncatula
Medtr4g084800 5.0kb downstream 5.0kb downstream 5000 false chr4: 33054152-33059151 Medicago truncatula
Medtr4g084800 10.0kb upstream 10.0kb upstream 11474 true chr4: 33042678-33054151 Medicago truncatula
Medtr4g084800 10.0kb upstream 10.0kb upstream 10000 false chr4: 33042678-33052677 Medicago truncatula
Medtr4g084800 10.0kb downstream 10.0kb downstream 11474 true chr4: 33052678-33064151 Medicago truncatula
Medtr4g084800 10.0kb downstream 10.0kb downstream 10000 false chr4: 33054152-33064151 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298091 5265 Fabidae View MSA
124038625 5270 Rosid View MSA
123752775 5271 Pentapetalae View MSA
122774777 5272 Eudicot View MSA
122050882 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121351668 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.469        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.149        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.239        

0 Strain