Gene : Medtr4g090620 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Description:  3-dehydroquinate dehydratase/shikimate dehydrogenase
Genomic Order:  4536 Name:  ? Medtr4g090620
Secondary Identifier:  ? PAC:31112347
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ARO-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6163 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g090620 0.5kb upstream 0.5kb upstream 6887 true chr4: 35936934-35943820 Medicago truncatula
Medtr4g090620 0.5kb upstream 0.5kb upstream 500 false chr4: 35943321-35943820 Medicago truncatula
Medtr4g090620 0.5kb downstream 0.5kb downstream 6887 true chr4: 35936434-35943320 Medicago truncatula
Medtr4g090620 0.5kb downstream 0.5kb downstream 500 false chr4: 35936434-35936933 Medicago truncatula
Medtr4g090620 1.0kb upstream 1.0kb upstream 7387 true chr4: 35936934-35944320 Medicago truncatula
Medtr4g090620 1.0kb upstream 1.0kb upstream 1000 false chr4: 35943321-35944320 Medicago truncatula
Medtr4g090620 1.0kb downstream 1.0kb downstream 7387 true chr4: 35935934-35943320 Medicago truncatula
Medtr4g090620 1.0kb downstream 1.0kb downstream 1000 false chr4: 35935934-35936933 Medicago truncatula
Medtr4g090620 2.0kb upstream 2.0kb upstream 8387 true chr4: 35936934-35945320 Medicago truncatula
Medtr4g090620 2.0kb upstream 2.0kb upstream 2000 false chr4: 35943321-35945320 Medicago truncatula
Medtr4g090620 2.0kb downstream 2.0kb downstream 8387 true chr4: 35934934-35943320 Medicago truncatula
Medtr4g090620 2.0kb downstream 2.0kb downstream 2000 false chr4: 35934934-35936933 Medicago truncatula
Medtr4g090620 5.0kb upstream 5.0kb upstream 11387 true chr4: 35936934-35948320 Medicago truncatula
Medtr4g090620 5.0kb upstream 5.0kb upstream 5000 false chr4: 35943321-35948320 Medicago truncatula
Medtr4g090620 5.0kb downstream 5.0kb downstream 11387 true chr4: 35931934-35943320 Medicago truncatula
Medtr4g090620 5.0kb downstream 5.0kb downstream 5000 false chr4: 35931934-35936933 Medicago truncatula
Medtr4g090620 10.0kb upstream 10.0kb upstream 16387 true chr4: 35936934-35953320 Medicago truncatula
Medtr4g090620 10.0kb upstream 10.0kb upstream 10000 false chr4: 35943321-35953320 Medicago truncatula
Medtr4g090620 10.0kb downstream 10.0kb downstream 16387 true chr4: 35926934-35943320 Medicago truncatula
Medtr4g090620 10.0kb downstream 10.0kb downstream 10000 false chr4: 35926934-35936933 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309838 5265 Fabidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.635        
cufflinks 5.827        
cufflinks 5.499        
cufflinks 4.003        
cufflinks 6.573        
cufflinks 1.507       Low
cufflinks 5.287        
cufflinks 5.501        
cufflinks 5.201        

0 Strain