Gene : Medtr4g076600 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.5.1.61 - Hydroxymethylbilane synthase / Uroporphyrinogen synthetase Description:  porphobilinogen deaminase
Genomic Order:  3626 Name:  ? Medtr4g076600
Secondary Identifier:  ? PAC:31111988
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5188 Medicago truncatula pathologic  
Mtruncatula PWY-5918 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g076600 0.5kb upstream 0.5kb upstream 4090 true chr4: 29299320-29303409 Medicago truncatula
Medtr4g076600 0.5kb upstream 0.5kb upstream 500 false chr4: 29299320-29299819 Medicago truncatula
Medtr4g076600 0.5kb downstream 0.5kb downstream 4090 true chr4: 29299820-29303909 Medicago truncatula
Medtr4g076600 0.5kb downstream 0.5kb downstream 500 false chr4: 29303410-29303909 Medicago truncatula
Medtr4g076600 1.0kb upstream 1.0kb upstream 4590 true chr4: 29298820-29303409 Medicago truncatula
Medtr4g076600 1.0kb upstream 1.0kb upstream 1000 false chr4: 29298820-29299819 Medicago truncatula
Medtr4g076600 1.0kb downstream 1.0kb downstream 4590 true chr4: 29299820-29304409 Medicago truncatula
Medtr4g076600 1.0kb downstream 1.0kb downstream 1000 false chr4: 29303410-29304409 Medicago truncatula
Medtr4g076600 2.0kb upstream 2.0kb upstream 5590 true chr4: 29297820-29303409 Medicago truncatula
Medtr4g076600 2.0kb upstream 2.0kb upstream 2000 false chr4: 29297820-29299819 Medicago truncatula
Medtr4g076600 2.0kb downstream 2.0kb downstream 5590 true chr4: 29299820-29305409 Medicago truncatula
Medtr4g076600 2.0kb downstream 2.0kb downstream 2000 false chr4: 29303410-29305409 Medicago truncatula
Medtr4g076600 5.0kb upstream 5.0kb upstream 8590 true chr4: 29294820-29303409 Medicago truncatula
Medtr4g076600 5.0kb upstream 5.0kb upstream 5000 false chr4: 29294820-29299819 Medicago truncatula
Medtr4g076600 5.0kb downstream 5.0kb downstream 8590 true chr4: 29299820-29308409 Medicago truncatula
Medtr4g076600 5.0kb downstream 5.0kb downstream 5000 false chr4: 29303410-29308409 Medicago truncatula
Medtr4g076600 10.0kb upstream 10.0kb upstream 13590 true chr4: 29289820-29303409 Medicago truncatula
Medtr4g076600 10.0kb upstream 10.0kb upstream 10000 false chr4: 29289820-29299819 Medicago truncatula
Medtr4g076600 10.0kb downstream 10.0kb downstream 13590 true chr4: 29299820-29313409 Medicago truncatula
Medtr4g076600 10.0kb downstream 10.0kb downstream 10000 false chr4: 29303410-29313409 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310703 5265 Fabidae View MSA
124064477 5270 Rosid View MSA
123748249 5271 Pentapetalae View MSA
122787678 5272 Eudicot View MSA
122042710 5273 Angiosperm View MSA
121348830 5274 Embryophyte View MSA
123423964 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.931        
cufflinks 31.996     High  
cufflinks 24.56     High  
cufflinks 2.75        
cufflinks 53.319     High High
cufflinks 0.804       Low
cufflinks 2.234        
cufflinks 34.737     High  
cufflinks 2.932        

0 Strain