Gene : Medtr4g109580 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) Description:  replication protein A 70 kDa protein
Genomic Order:  5773 Name:  ? Medtr4g109580
Secondary Identifier:  ? PAC:31111742
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g109580 0.5kb upstream 0.5kb upstream 4027 true chr4: 45543668-45547694 Medicago truncatula
Medtr4g109580 0.5kb upstream 0.5kb upstream 500 false chr4: 45543668-45544167 Medicago truncatula
Medtr4g109580 0.5kb downstream 0.5kb downstream 4027 true chr4: 45544168-45548194 Medicago truncatula
Medtr4g109580 0.5kb downstream 0.5kb downstream 500 false chr4: 45547695-45548194 Medicago truncatula
Medtr4g109580 1.0kb upstream 1.0kb upstream 4527 true chr4: 45543168-45547694 Medicago truncatula
Medtr4g109580 1.0kb upstream 1.0kb upstream 1000 false chr4: 45543168-45544167 Medicago truncatula
Medtr4g109580 1.0kb downstream 1.0kb downstream 4527 true chr4: 45544168-45548694 Medicago truncatula
Medtr4g109580 1.0kb downstream 1.0kb downstream 1000 false chr4: 45547695-45548694 Medicago truncatula
Medtr4g109580 2.0kb upstream 2.0kb upstream 5527 true chr4: 45542168-45547694 Medicago truncatula
Medtr4g109580 2.0kb upstream 2.0kb upstream 2000 false chr4: 45542168-45544167 Medicago truncatula
Medtr4g109580 2.0kb downstream 2.0kb downstream 5527 true chr4: 45544168-45549694 Medicago truncatula
Medtr4g109580 2.0kb downstream 2.0kb downstream 2000 false chr4: 45547695-45549694 Medicago truncatula
Medtr4g109580 5.0kb upstream 5.0kb upstream 8527 true chr4: 45539168-45547694 Medicago truncatula
Medtr4g109580 5.0kb upstream 5.0kb upstream 5000 false chr4: 45539168-45544167 Medicago truncatula
Medtr4g109580 5.0kb downstream 5.0kb downstream 8527 true chr4: 45544168-45552694 Medicago truncatula
Medtr4g109580 5.0kb downstream 5.0kb downstream 5000 false chr4: 45547695-45552694 Medicago truncatula
Medtr4g109580 10.0kb upstream 10.0kb upstream 13527 true chr4: 45534168-45547694 Medicago truncatula
Medtr4g109580 10.0kb upstream 10.0kb upstream 10000 false chr4: 45534168-45544167 Medicago truncatula
Medtr4g109580 10.0kb downstream 10.0kb downstream 13527 true chr4: 45544168-45557694 Medicago truncatula
Medtr4g109580 10.0kb downstream 10.0kb downstream 10000 false chr4: 45547695-45557694 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301113 5265 Fabidae View MSA
124062853 5270 Rosid View MSA
123746510 5271 Pentapetalae View MSA
122790836 5272 Eudicot View MSA
122046944 5273 Angiosperm View MSA
121346353 5274 Embryophyte View MSA
123426361 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.317        
cufflinks 0.346        
cufflinks 0.159       Low
cufflinks 3.502        
cufflinks 0.149       Low
cufflinks 1.706        
cufflinks 11.908     High High
cufflinks 0.136       Low
cufflinks 21.954     High High

0 Strain