Gene : Medtr4g112080 M. truncatula Mt4.0v1
Defline:  (1 of 2) 6.3.2.5 - Phosphopantothenate--cysteine ligase / Phosphopantothenoylcysteine synthetase Description:  phosphopantothenate-cysteine ligase-like protein
Genomic Order:  5857 Name:  ? Medtr4g112080
Secondary Identifier:  ? PAC:31106849
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula COA-PWY Medicago truncatula pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g112080 0.5kb upstream 0.5kb upstream 5722 true chr4: 46159496-46165217 Medicago truncatula
Medtr4g112080 0.5kb upstream 0.5kb upstream 500 false chr4: 46164718-46165217 Medicago truncatula
Medtr4g112080 0.5kb downstream 0.5kb downstream 5722 true chr4: 46158996-46164717 Medicago truncatula
Medtr4g112080 0.5kb downstream 0.5kb downstream 500 false chr4: 46158996-46159495 Medicago truncatula
Medtr4g112080 1.0kb upstream 1.0kb upstream 6222 true chr4: 46159496-46165717 Medicago truncatula
Medtr4g112080 1.0kb upstream 1.0kb upstream 1000 false chr4: 46164718-46165717 Medicago truncatula
Medtr4g112080 1.0kb downstream 1.0kb downstream 6222 true chr4: 46158496-46164717 Medicago truncatula
Medtr4g112080 1.0kb downstream 1.0kb downstream 1000 false chr4: 46158496-46159495 Medicago truncatula
Medtr4g112080 2.0kb upstream 2.0kb upstream 7222 true chr4: 46159496-46166717 Medicago truncatula
Medtr4g112080 2.0kb upstream 2.0kb upstream 2000 false chr4: 46164718-46166717 Medicago truncatula
Medtr4g112080 2.0kb downstream 2.0kb downstream 7222 true chr4: 46157496-46164717 Medicago truncatula
Medtr4g112080 2.0kb downstream 2.0kb downstream 2000 false chr4: 46157496-46159495 Medicago truncatula
Medtr4g112080 5.0kb upstream 5.0kb upstream 10222 true chr4: 46159496-46169717 Medicago truncatula
Medtr4g112080 5.0kb upstream 5.0kb upstream 5000 false chr4: 46164718-46169717 Medicago truncatula
Medtr4g112080 5.0kb downstream 5.0kb downstream 10222 true chr4: 46154496-46164717 Medicago truncatula
Medtr4g112080 5.0kb downstream 5.0kb downstream 5000 false chr4: 46154496-46159495 Medicago truncatula
Medtr4g112080 10.0kb upstream 10.0kb upstream 15222 true chr4: 46159496-46174717 Medicago truncatula
Medtr4g112080 10.0kb upstream 10.0kb upstream 10000 false chr4: 46164718-46174717 Medicago truncatula
Medtr4g112080 10.0kb downstream 10.0kb downstream 15222 true chr4: 46149496-46164717 Medicago truncatula
Medtr4g112080 10.0kb downstream 10.0kb downstream 10000 false chr4: 46149496-46159495 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305468 5265 Fabidae View MSA
124065288 5270 Rosid View MSA
123750270 5271 Pentapetalae View MSA
122791769 5272 Eudicot View MSA
122051236 5273 Angiosperm View MSA
121346014 5274 Embryophyte View MSA
123425902 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.481       High
cufflinks 0.426        
cufflinks 0.445        
cufflinks 0.418        
cufflinks 0.418        
cufflinks 0.313       Low
cufflinks 0.36        
cufflinks 0.4        
cufflinks 0.427        

0 Strain