Gene : Medtr4g106870 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.1.1.267 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase / DXP-reductoisomerase Description:  1-deoxy-D-xylulose 5-phosphate reductoisomerase
Genomic Order:  5544 Name:  ? Medtr4g106870
Secondary Identifier:  ? PAC:31111781
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7560 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g106870 0.5kb upstream 0.5kb upstream 5510 true chr4: 43906312-43911821 Medicago truncatula
Medtr4g106870 0.5kb upstream 0.5kb upstream 500 false chr4: 43911322-43911821 Medicago truncatula
Medtr4g106870 0.5kb downstream 0.5kb downstream 5510 true chr4: 43905812-43911321 Medicago truncatula
Medtr4g106870 0.5kb downstream 0.5kb downstream 500 false chr4: 43905812-43906311 Medicago truncatula
Medtr4g106870 1.0kb upstream 1.0kb upstream 6010 true chr4: 43906312-43912321 Medicago truncatula
Medtr4g106870 1.0kb upstream 1.0kb upstream 1000 false chr4: 43911322-43912321 Medicago truncatula
Medtr4g106870 1.0kb downstream 1.0kb downstream 6010 true chr4: 43905312-43911321 Medicago truncatula
Medtr4g106870 1.0kb downstream 1.0kb downstream 1000 false chr4: 43905312-43906311 Medicago truncatula
Medtr4g106870 2.0kb upstream 2.0kb upstream 7010 true chr4: 43906312-43913321 Medicago truncatula
Medtr4g106870 2.0kb upstream 2.0kb upstream 2000 false chr4: 43911322-43913321 Medicago truncatula
Medtr4g106870 2.0kb downstream 2.0kb downstream 7010 true chr4: 43904312-43911321 Medicago truncatula
Medtr4g106870 2.0kb downstream 2.0kb downstream 2000 false chr4: 43904312-43906311 Medicago truncatula
Medtr4g106870 5.0kb upstream 5.0kb upstream 10010 true chr4: 43906312-43916321 Medicago truncatula
Medtr4g106870 5.0kb upstream 5.0kb upstream 5000 false chr4: 43911322-43916321 Medicago truncatula
Medtr4g106870 5.0kb downstream 5.0kb downstream 10010 true chr4: 43901312-43911321 Medicago truncatula
Medtr4g106870 5.0kb downstream 5.0kb downstream 5000 false chr4: 43901312-43906311 Medicago truncatula
Medtr4g106870 10.0kb upstream 10.0kb upstream 15010 true chr4: 43906312-43921321 Medicago truncatula
Medtr4g106870 10.0kb upstream 10.0kb upstream 10000 false chr4: 43911322-43921321 Medicago truncatula
Medtr4g106870 10.0kb downstream 10.0kb downstream 15010 true chr4: 43896312-43911321 Medicago truncatula
Medtr4g106870 10.0kb downstream 10.0kb downstream 10000 false chr4: 43896312-43906311 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041406 5273 Angiosperm View MSA
122304768 5265 Fabidae View MSA
124066605 5270 Rosid View MSA
123736883 5271 Pentapetalae View MSA
122791920 5272 Eudicot View MSA
121344534 5274 Embryophyte View MSA
123424385 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.662       Low
cufflinks 13.848     High  
cufflinks 12.455     High  
cufflinks 10.617     High  
cufflinks 17.352     High High
cufflinks 3.467       Low
cufflinks 7.299        
cufflinks 12.38     High  
cufflinks 11.622     High  

0 Strain