Gene : Medtr4g087920 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR12565//PTHR12565:SF82 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Description:  helix loop helix DNA-binding domain protein
Genomic Order:  4329 Name:  ? Medtr4g087920
Secondary Identifier:  ? PAC:31107391
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g087920 0.5kb upstream 0.5kb upstream 4095 true chr4: 34476873-34480967 Medicago truncatula
Medtr4g087920 0.5kb upstream 0.5kb upstream 500 false chr4: 34476873-34477372 Medicago truncatula
Medtr4g087920 0.5kb downstream 0.5kb downstream 4095 true chr4: 34477373-34481467 Medicago truncatula
Medtr4g087920 0.5kb downstream 0.5kb downstream 500 false chr4: 34480968-34481467 Medicago truncatula
Medtr4g087920 1.0kb upstream 1.0kb upstream 4595 true chr4: 34476373-34480967 Medicago truncatula
Medtr4g087920 1.0kb upstream 1.0kb upstream 1000 false chr4: 34476373-34477372 Medicago truncatula
Medtr4g087920 1.0kb downstream 1.0kb downstream 4595 true chr4: 34477373-34481967 Medicago truncatula
Medtr4g087920 1.0kb downstream 1.0kb downstream 1000 false chr4: 34480968-34481967 Medicago truncatula
Medtr4g087920 2.0kb upstream 2.0kb upstream 5595 true chr4: 34475373-34480967 Medicago truncatula
Medtr4g087920 2.0kb upstream 2.0kb upstream 2000 false chr4: 34475373-34477372 Medicago truncatula
Medtr4g087920 2.0kb downstream 2.0kb downstream 5595 true chr4: 34477373-34482967 Medicago truncatula
Medtr4g087920 2.0kb downstream 2.0kb downstream 2000 false chr4: 34480968-34482967 Medicago truncatula
Medtr4g087920 5.0kb upstream 5.0kb upstream 8595 true chr4: 34472373-34480967 Medicago truncatula
Medtr4g087920 5.0kb upstream 5.0kb upstream 5000 false chr4: 34472373-34477372 Medicago truncatula
Medtr4g087920 5.0kb downstream 5.0kb downstream 8595 true chr4: 34477373-34485967 Medicago truncatula
Medtr4g087920 5.0kb downstream 5.0kb downstream 5000 false chr4: 34480968-34485967 Medicago truncatula
Medtr4g087920 10.0kb upstream 10.0kb upstream 13595 true chr4: 34467373-34480967 Medicago truncatula
Medtr4g087920 10.0kb upstream 10.0kb upstream 10000 false chr4: 34467373-34477372 Medicago truncatula
Medtr4g087920 10.0kb downstream 10.0kb downstream 13595 true chr4: 34477373-34490967 Medicago truncatula
Medtr4g087920 10.0kb downstream 10.0kb downstream 10000 false chr4: 34480968-34490967 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302460 5265 Fabidae View MSA
124070822 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.013     Low  
cufflinks 0.031     Low  
cufflinks 0.352       High
cufflinks 0.003     Low Low
cufflinks 0.269       High

0 Strain