Gene : Medtr4g088375 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Description:  homeobox domain protein
Genomic Order:  4395 Name:  ? Medtr4g088375
Secondary Identifier:  ? PAC:31107500
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g088375 0.5kb upstream 0.5kb upstream 10937 true chr4: 34982506-34993442 Medicago truncatula
Medtr4g088375 0.5kb upstream 0.5kb upstream 500 false chr4: 34982506-34983005 Medicago truncatula
Medtr4g088375 0.5kb downstream 0.5kb downstream 10937 true chr4: 34983006-34993942 Medicago truncatula
Medtr4g088375 0.5kb downstream 0.5kb downstream 500 false chr4: 34993443-34993942 Medicago truncatula
Medtr4g088375 1.0kb upstream 1.0kb upstream 11437 true chr4: 34982006-34993442 Medicago truncatula
Medtr4g088375 1.0kb upstream 1.0kb upstream 1000 false chr4: 34982006-34983005 Medicago truncatula
Medtr4g088375 1.0kb downstream 1.0kb downstream 11437 true chr4: 34983006-34994442 Medicago truncatula
Medtr4g088375 1.0kb downstream 1.0kb downstream 1000 false chr4: 34993443-34994442 Medicago truncatula
Medtr4g088375 2.0kb upstream 2.0kb upstream 12437 true chr4: 34981006-34993442 Medicago truncatula
Medtr4g088375 2.0kb upstream 2.0kb upstream 2000 false chr4: 34981006-34983005 Medicago truncatula
Medtr4g088375 2.0kb downstream 2.0kb downstream 12437 true chr4: 34983006-34995442 Medicago truncatula
Medtr4g088375 2.0kb downstream 2.0kb downstream 2000 false chr4: 34993443-34995442 Medicago truncatula
Medtr4g088375 5.0kb upstream 5.0kb upstream 15437 true chr4: 34978006-34993442 Medicago truncatula
Medtr4g088375 5.0kb upstream 5.0kb upstream 5000 false chr4: 34978006-34983005 Medicago truncatula
Medtr4g088375 5.0kb downstream 5.0kb downstream 15437 true chr4: 34983006-34998442 Medicago truncatula
Medtr4g088375 5.0kb downstream 5.0kb downstream 5000 false chr4: 34993443-34998442 Medicago truncatula
Medtr4g088375 10.0kb upstream 10.0kb upstream 20437 true chr4: 34973006-34993442 Medicago truncatula
Medtr4g088375 10.0kb upstream 10.0kb upstream 10000 false chr4: 34973006-34983005 Medicago truncatula
Medtr4g088375 10.0kb downstream 10.0kb downstream 20437 true chr4: 34983006-35003442 Medicago truncatula
Medtr4g088375 10.0kb downstream 10.0kb downstream 10000 false chr4: 34993443-35003442 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297221 5265 Fabidae View MSA
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.723        
cufflinks 2.955        
cufflinks 3.177        
cufflinks 0.422       Low
cufflinks 3.13        
cufflinks 0.604       Low
cufflinks 1.258        
cufflinks 2.81        
cufflinks 0.836        

0 Strain