Gene : Medtr4g088885 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23078 - VESICULAR-FUSION PROTEIN NSF Description:  AAA family ATPase
Genomic Order:  4474 Name:  ? Medtr4g088885
Secondary Identifier:  ? PAC:31106872
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g088885 0.5kb upstream 0.5kb upstream 13221 true chr4: 35479295-35492515 Medicago truncatula
Medtr4g088885 0.5kb upstream 0.5kb upstream 500 false chr4: 35479295-35479794 Medicago truncatula
Medtr4g088885 0.5kb downstream 0.5kb downstream 13221 true chr4: 35479795-35493015 Medicago truncatula
Medtr4g088885 0.5kb downstream 0.5kb downstream 500 false chr4: 35492516-35493015 Medicago truncatula
Medtr4g088885 1.0kb upstream 1.0kb upstream 13721 true chr4: 35478795-35492515 Medicago truncatula
Medtr4g088885 1.0kb upstream 1.0kb upstream 1000 false chr4: 35478795-35479794 Medicago truncatula
Medtr4g088885 1.0kb downstream 1.0kb downstream 13721 true chr4: 35479795-35493515 Medicago truncatula
Medtr4g088885 1.0kb downstream 1.0kb downstream 1000 false chr4: 35492516-35493515 Medicago truncatula
Medtr4g088885 2.0kb upstream 2.0kb upstream 14721 true chr4: 35477795-35492515 Medicago truncatula
Medtr4g088885 2.0kb upstream 2.0kb upstream 2000 false chr4: 35477795-35479794 Medicago truncatula
Medtr4g088885 2.0kb downstream 2.0kb downstream 14721 true chr4: 35479795-35494515 Medicago truncatula
Medtr4g088885 2.0kb downstream 2.0kb downstream 2000 false chr4: 35492516-35494515 Medicago truncatula
Medtr4g088885 5.0kb upstream 5.0kb upstream 17721 true chr4: 35474795-35492515 Medicago truncatula
Medtr4g088885 5.0kb upstream 5.0kb upstream 5000 false chr4: 35474795-35479794 Medicago truncatula
Medtr4g088885 5.0kb downstream 5.0kb downstream 17721 true chr4: 35479795-35497515 Medicago truncatula
Medtr4g088885 5.0kb downstream 5.0kb downstream 5000 false chr4: 35492516-35497515 Medicago truncatula
Medtr4g088885 10.0kb upstream 10.0kb upstream 22721 true chr4: 35469795-35492515 Medicago truncatula
Medtr4g088885 10.0kb upstream 10.0kb upstream 10000 false chr4: 35469795-35479794 Medicago truncatula
Medtr4g088885 10.0kb downstream 10.0kb downstream 22721 true chr4: 35479795-35502515 Medicago truncatula
Medtr4g088885 10.0kb downstream 10.0kb downstream 10000 false chr4: 35492516-35502515 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303184 5265 Fabidae View MSA
124065880 5270 Rosid View MSA
123748878 5271 Pentapetalae View MSA
122787277 5272 Eudicot View MSA
122044573 5273 Angiosperm View MSA
121350302 5274 Embryophyte View MSA
123424602 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.198     High High
cufflinks 6.327        
cufflinks 7.072        
cufflinks 4.751       Low
cufflinks 7.1        
cufflinks 4.148       Low
cufflinks 10.118     High  
cufflinks 6.184        
cufflinks 8.697        

0 Strain