Gene : Medtr4g103580 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02037//PF10172 - SAP domain (SAP) // Det1 complexing ubiquitin ligase (DDA1) Description:  Det1 complexing ubiquitin ligase
Genomic Order:  5399 Name:  ? Medtr4g103580
Secondary Identifier:  ? PAC:31109389
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g103580 0.5kb upstream 0.5kb upstream 4658 true chr4: 42809305-42813962 Medicago truncatula
Medtr4g103580 0.5kb upstream 0.5kb upstream 500 false chr4: 42809305-42809804 Medicago truncatula
Medtr4g103580 0.5kb downstream 0.5kb downstream 4658 true chr4: 42809805-42814462 Medicago truncatula
Medtr4g103580 0.5kb downstream 0.5kb downstream 500 false chr4: 42813963-42814462 Medicago truncatula
Medtr4g103580 1.0kb upstream 1.0kb upstream 5158 true chr4: 42808805-42813962 Medicago truncatula
Medtr4g103580 1.0kb upstream 1.0kb upstream 1000 false chr4: 42808805-42809804 Medicago truncatula
Medtr4g103580 1.0kb downstream 1.0kb downstream 5158 true chr4: 42809805-42814962 Medicago truncatula
Medtr4g103580 1.0kb downstream 1.0kb downstream 1000 false chr4: 42813963-42814962 Medicago truncatula
Medtr4g103580 2.0kb upstream 2.0kb upstream 6158 true chr4: 42807805-42813962 Medicago truncatula
Medtr4g103580 2.0kb upstream 2.0kb upstream 2000 false chr4: 42807805-42809804 Medicago truncatula
Medtr4g103580 2.0kb downstream 2.0kb downstream 6158 true chr4: 42809805-42815962 Medicago truncatula
Medtr4g103580 2.0kb downstream 2.0kb downstream 2000 false chr4: 42813963-42815962 Medicago truncatula
Medtr4g103580 5.0kb upstream 5.0kb upstream 9158 true chr4: 42804805-42813962 Medicago truncatula
Medtr4g103580 5.0kb upstream 5.0kb upstream 5000 false chr4: 42804805-42809804 Medicago truncatula
Medtr4g103580 5.0kb downstream 5.0kb downstream 9158 true chr4: 42809805-42818962 Medicago truncatula
Medtr4g103580 5.0kb downstream 5.0kb downstream 5000 false chr4: 42813963-42818962 Medicago truncatula
Medtr4g103580 10.0kb upstream 10.0kb upstream 14158 true chr4: 42799805-42813962 Medicago truncatula
Medtr4g103580 10.0kb upstream 10.0kb upstream 10000 false chr4: 42799805-42809804 Medicago truncatula
Medtr4g103580 10.0kb downstream 10.0kb downstream 14158 true chr4: 42809805-42823962 Medicago truncatula
Medtr4g103580 10.0kb downstream 10.0kb downstream 10000 false chr4: 42813963-42823962 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299442 5265 Fabidae View MSA
124066068 5270 Rosid View MSA
123746630 5271 Pentapetalae View MSA
122792914 5272 Eudicot View MSA
122045612 5273 Angiosperm View MSA
121347246 5274 Embryophyte View MSA
123425668 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.948        
cufflinks 1.489        
cufflinks 1.777        
cufflinks 2.431       High
cufflinks 1.553        
cufflinks 1.049       Low
cufflinks 1.666        
cufflinks 1.542        
cufflinks 1.544        

0 Strain